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| Status |
Public on Apr 01, 2008 |
| Title |
HGS17_min_promoter_set |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Roche NimbleGen |
| Manufacture protocol |
See Roche NimbleGen website
|
| Catalog number |
2005-04-18_HGS17_min_promoter_set; design ID: 1871 |
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| Description |
ChIP-chip promoter microarray based on the HG17 genome build (May 2004) covering approximately 1.5 kb around the transcription start site
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| Contributor(s) |
Figueroa ME, Melnick AM, Greally JM |
| Submission date |
Mar 18, 2008 |
| Last update date |
Dec 18, 2009 |
| Contact name |
Maria Eugenia Figueroa |
| E-mail(s) |
mef162@miami.edu
|
| Organization name |
University of Miiami
|
| Department |
Human Genetics
|
| Lab |
Maria Figueroa
|
| Street address |
1501 NW 10th Ave, BRB 709A, Locator code C227
|
| City |
Miami |
| State/province |
FL |
| ZIP/Postal code |
33136 |
| Country |
USA |
| |
|
| Samples (20)
|
GSM275955, GSM275956, GSM275957, GSM275958, GSM275959, GSM275960
GSM275961, GSM275962, GSM307212, GSM307214, GSM307215, GSM307216, GSM487631, GSM487632, GSM487633, GSM517328, GSM517329, GSM517330, GSM517331, GSM517332
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| Series (4)
|
| GSE10887 |
H3K9acetyl ChIP on chip for integrative epigenomic study in leukemia samples |
| GSE12224 |
p53 and p73 ChIP-chip experiments in HCT116-3(6) cells |
| GSE19562 |
Comparative ChIP-chip analysis of general transcription factor TFIIB and negative cofactor NC2 in human B cells |
| GSE20598 |
5-azacytidine treatment reorganizes genomic histone modification patterns |
|
| Data table header descriptions |
| ID |
|
| BUILD |
Genome build April 2006 |
| GB_ACC |
Accession number |
| CHROM |
Chromosome number |
| RANGE_GB |
ACCESSION.VERSION |
| RANGE_STRAND |
Chromosome strand |
| RANGE_START |
Transcription start site |
| RANGE_END |
Transcription end site |
| EXONCOUNT |
Number of exons in transcript |
| EXONSTARTS |
Positions where exons begin |
| EXONENDS |
Positions where exons end |
| DESCRIPTION |
Gene description |
| Data table |
| ID |
BUILD |
GB_ACC |
CHROM |
RANGE_GB |
RANGE_STRAND |
RANGE_START |
RANGE_END |
EXONCOUNT |
EXONSTARTS |
EXONENDS |
DESCRIPTION |
| HSAP0406S00000003 |
Apr-06 |
AK024481 |
chr1 |
NC_000001.8 |
- |
4269 |
8596 |
2 |
4269,6720, |
6628,8596, |
|
| HSAP0406S00000005 |
Apr-06 |
AK024448 |
chr1 |
NC_000001.8 |
- |
10369 |
19200 |
2 |
10369,19183, |
14754,19200, |
|
| HSAP0406S00000008 |
Apr-06 |
AF346307 |
chr1 |
NC_000001.8 |
- |
24416 |
25944 |
3 |
24416,25139,25583, |
25037,25344,25944, |
|
| HSAP0406S00000009 |
Apr-06 |
NM_001005484 |
chr1 |
NC_000001.8 |
+ |
58953 |
59871 |
1 |
58953, |
59871, |
|
| HSAP0406S00000010 |
Apr-06 |
AK128780 |
chr1 |
NC_000001.8 |
- |
124776 |
129322 |
3 |
124776,127240,129109, |
126020,127929,129322, |
|
| HSAP0406S00000011 |
Apr-06 |
BC031359 |
chr1 |
NC_000001.8 |
- |
225978 |
227297 |
1 |
225978, |
227297, |
|
| HSAP0406S00000012 |
Apr-06 |
AK128780 |
chr1 |
NC_000001.8 |
+ |
364535 |
368303 |
3 |
364535,365928,367059, |
364748,366620,368303, |
|
| HSAP0406S00000013 |
Apr-06 |
NM_001005277 |
chr1 |
NC_000001.8 |
+ |
407521 |
408460 |
1 |
407521, |
408460, |
|
| HSAP0406S00000014 |
Apr-06 |
BC031359 |
chr1 |
NC_000001.8 |
+ |
502134 |
503453 |
1 |
502134, |
503453, |
|
| HSAP0406S00000015 |
Apr-06 |
NM_001005277 |
chr1 |
NC_000001.8 |
- |
660958 |
661897 |
1 |
660958, |
661897, |
|
| HSAP0406S00000016 |
Apr-06 |
AK128780 |
chr1 |
NC_000001.8 |
- |
701142 |
704813 |
3 |
701142,702728,704604, |
702386,703424,704813, |
|
| HSAP0406S00000017 |
Apr-06 |
NM_207464 |
chr1 |
NC_000001.8 |
+ |
792613 |
795077 |
2 |
792613,793965, |
793445,795077, |
|
| HSAP0406S00000018 |
Apr-06 |
BC017762 |
chr1 |
NC_000001.8 |
- |
801457 |
802765 |
1 |
801457, |
802765, |
|
| HSAP0406S00000019 |
Apr-06 |
BC015393 |
chr1 |
NC_000001.8 |
+ |
831760 |
832491 |
1 |
831760, |
832491, |
|
| HSAP0406S00000020 |
Apr-06 |
AK096928 |
chr1 |
NC_000001.8 |
- |
892817 |
896259 |
1 |
892817, |
896259, |
|
| HSAP0406S00000022 |
Apr-06 |
BC024295 |
chr1 |
NC_000001.8 |
+ |
911288 |
920097 |
10 |
911288,914562,914797,916666,917658,917932,918081,918775,919220,919430, |
911419,914652,914935,916829,917774,918011,918581,918900,919331,920097, |
|
| HSAP0406S00000025 |
Apr-06 |
BC003555 |
chr1 |
NC_000001.8 |
- |
919738 |
934795 |
19 |
919738,920579,921040,921695,921924,923653,924012,926649,927522,927934,928697,929304,929526,931445,931617,932416,932621,934451,934737, |
920323,920669,921176,921809,922068,923755,924126,926761,927662,928123,928811,929415,929605,931536,931738,932548,932796,934604,934795, |
|
| HSAP0406S00000027 |
Apr-06 |
NM_198317 |
chr1 |
NC_000001.8 |
+ |
936109 |
941162 |
12 |
936109,936815,937151,937348,937877,938226,938631,938859,939442,939629,939871,940409, |
936323,937075,937273,937570,937994,938440,938776,939027,939531,939703,940053,941162, |
|
| HSAP0406S00000029 |
Apr-06 |
NM_032129 |
chr1 |
NC_000001.8 |
+ |
941943 |
950549 |
16 |
941943,942150,945723,945967,946132,946325,946559,946770,947521,947734,948307,948632,948946,949279,949762,949888, |
942061,942250,945870,946048,946205,946453,946655,946851,947597,947871,948457,948773,949087,949498,949811,950549, |
|
| HSAP0406S00000031 |
Apr-06 |
AK123855 |
chr1 |
NC_000001.8 |
- |
950650 |
957540 |
5 |
950650,951945,954327,956583,957511, |
951716,952071,956104,956620,957540, |
|
Total number of rows: 24134
Table truncated, full table size 5385 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL6603.ndf.gz |
19.9 Mb |
(ftp)(http) |
NDF |
| GPL6603.ngd.gz |
3.6 Mb |
(ftp)(http) |
NGD |
| GPL6603.pos.gz |
2.1 Mb |
(ftp)(http) |
POS |
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