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Platform GPL4346 Query DataSets for GPL4346
Status Public on Sep 22, 2006
Title URGV Arabidopsis thaliana 25K CATMA_v2.2
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Arabidopsis thaliana
Manufacturer URGV (Plant Genomic Research Unit)
Manufacture protocol A.thaliana genes were predicted with Eugene software (Foissac S. et al., Nucleic Acids Res., 2003) and gene-specific sequence tags were automatically designed (Thareau et al. Bioinformatics, 2003 Nov 22). Two rounds of PCR were performed and PCR products were finally purified and dissolved in 50% DMSO in TE at concentrations ranging between 50-200ng/ul and re-arrayed in 1536 microtiter plates. The pins are washed in 0.1% SDS at 50 °C then three times in bi-distilled water. Spotter settings are 45-55% humidity, and a pitch = 180 um. The room temperature is set between 19 and 21 degrees Celsius and below 40 % humidity. The microtiter plates are placed in the biobank. The four trays are cleaned and 100-120 slides placed on them (30 slides per tray). The spotting lasts 25 hours. The slides are stored in the dark in a dry-cabinet for 3 days and UV-cross-linked at 300 mJ. After crosslinking, the slides are stored in the dark in a dry-cabinet.
- 24576 Gene Specific Tags (GST)
- 615 Chloroplastic and Mitochondrial Tilling array probes
- 48 Non Protein Coding (NPC)
Support glass
Coating aminosilane
 
Description Corning Ultra-GAPS (TM) slides are spotted with 64 pins (8x8) therefore the spotted area is divided into 3 metablocks, each containning 64 blocks of 144 spots (12x12)
 
Web link http://www.evry.inra.fr/public/groups/jean-pierre.html
Contributor(s) Renou J, Bitton F, Taconnat L, Thareau V, Hilson P
Citation(s) 15489341
Submission date Sep 20, 2006
Last update date May 03, 2012
Contact name Frederique Bitton
E-mail(s) bitton@evry.inra.fr
URL http://www.evry.inra.fr
Organization name INRA
Lab URGV
Street address 2 rue Gaston Cremieux
City Evry
ZIP/Postal code 91000
Country France
 
Samples (1171) GSM136930, GSM136931, GSM159351, GSM159352, GSM179469, GSM179470 
Series (95)
GSE5885 Genes expressed in Arabidopsis pollen: Comparison between Columbia and WS pollen RNAs
GSE6910 Which genes are expressed in Arabidopsis pollen.- Comparison between Columbia and WS pollen RNAs.
GSE7420 The impact of cell wall alterations on global gene expression.Overexpressor against wild type.

Data table header descriptions
ID
NAME Name of probes (alternative name)
SPOT_ID Name of probes (alternative name)
SEQUENCE Sequence of probes

Data table
ID NAME SPOT_ID SEQUENCE
1 BAR BAR
2 BT BT
3 C001 (CHLORO1) C001 GAACGACGGGAATTGAACCCGCGATGGTGAATTCACAATCCACTGCCTTAATCCACTTGGCTACATCCGCCCCTACGCTACTATCTATTCTTTTTTGTATTGTCTAAAAAAAAAAAAAAATACAAATTTCAATAAAAAATAAAAAAAGGTAGCAAATTCCACCTTATTTTTTTTCTAATAAAAAATATATAGTAATTTTTTATTATTTATTATTATTATTTATTATTAATATAATAAATAAAGTAAAATATGATACTCTATAAAAATTTGCTCATTTTTATAGAAAAAAACGAGTAATATAAGCCCTCTTTCTTATTTAAAGAAGGCTTATATTGCTCGTTTTTTACTAAACTAGATCTAGACTAACACTAACGAATTATCCATTTGTAGATGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAA
4 C002 (CHLORO2) C002 TGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATC
5 C003 (CHLORO3) C003 TCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAAGCGACCCCATAGGCTTTCGCTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCCTTGGTTTATTTAATAATCAGGGACTCCCAAGCGCACAAATTCTCTAAGTAGATAATTGAGAGCTTGTTATGAAACAGTATAACATGACTTATATAGCCATGTCAACCAATGTAAAATGGATAAGATCCTTTTAGTTTAGATTCATAAAAAATTTTTTGTAATCGATGAAATAAATTAGAAGCGAATCCACATACATAGAAATAGAATTGCTCTAGGAATATTTTTTCCAAATCATATGAATACGATTGAATACGATCCGTAGTGGGTTGCCCGGGACTCGAACCCGGAACTAGTCGGAT
6 C004 (CHLORO4) C004 TTGAATACGATCCGTAGTGGGTTGCCCGGGACTCGAACCCGGAACTAGTCGGATGGAGTAGATAATCTCCTTGTTAAAATGAAAAAAAAAAGGTAAAAAACCCCTCCCCAAACCGTGCTTGCATTTTTCATTGCACACAGCTTTCTCTATGTATACATAGAAAACTCAATTTCTTTGGTTCCTTATAAATAGGACTCCAAATTCAATACTCAGTAAATTTAATCGTAGTCTTACTGTATGAACATTTAATAATAGAAATAAAGCACTTTTGATAATAAAAAATAATTGATTTTTTTTGTTATCTCTGCATAAATTTTAATAAATTTCGATTTCATTTATGGGGTCTCAGAACCCAATTATTCATGATTGACCAAATCATTAAGATAAAGAATATCCAAATACCAAATTCGCACTCGATATAATCTTTTAGAAGCATAATAACTTCTTGGGAAGATTAAAGAAAGAACTTGGTCTTCCC
7 C005 (CHLORO5) C005 TTTCTAGCATTTGACTACGTACCACTAAAGGGTTTAATCGCAAACTTGACAGATAACCCAGAAACTCTAAATTATCTTTAGATAATTGATTTATATTGACCTTTTGCGATTGAAACCATACCGAAAAATAACATTGCCATAAATTAACAAAATAATATTTCCATTTATTCATCAGAAGCGGCGTATCCTTTGTTGCCAGAATGCATCTTCCGTGATATCTAACATAATGTATGAAAGGATCCTTGAGCAACCCTAGGATTGCCGGAAAATTATTAACAAAAACTTTGAAAAAATGGTGTATTTTTCCATAGAATACAATTCGCTCAAAAAGGACTTCATAAGATGTCGATCGTAAATGCGAAGACCGCTTGCGTAGAAAAAAAAAGATGGATTCGTATTCACATACA
8 C006 (CHLORO6) C006 GGTTCACATCCTTAGTGGGAATAATCAAACGATTCTGTTCATACATTCGCAAAATTAAGCGTTTCGTAATTAGTGAACTATATTTTTTGTCATAATCCGCATTTTCCAAGAAAATATAGCGATTTCTATTTAATCTATTTAAACCATGATCATAAGCAAGTACATAAATATACTCCCGAAAAAAAAGTGGATATAGAAAACTCTGTTGCCGAGCCCCATCGAACTCTAAATATCCTTGAAATTTATCCATTTGGATTGAAATTCGATTTGAACTGAAGGTAAAGTCTTTATTTTCTTGAGTTCTGAAATGACACATAGTGCGATACAGTCAAAATAAGGTATTAGACTACGAAAGCTATAGATATAGATACCTCATAAACAGGTAGACTGCTAACCGGATTCTCTATCTTTAATAGGTTTCTGTTCGTT
9 C007 (CHLORO7) C007 AGATACCTCATAAACAGGTAGACTGCTAACCGGATTCTCTATCTTTAATAGGTTTCTGTTCGTTATATTATAGAATAACAAAACAAGATTATTAGAAATCCTTTATTTTTTTAACCTAATCGCTCTTTTGATTTTGGAAATATATATATTTTTTATCAATATACTGCTTCTTTTACACACTCCAACCTAATCCAAATGGACTAGTTAAAACAATAATTAGGACTCATGAAAAAATTGATAATAACACGCAAGAAAAAAATGCCTTCCCATACCCGTATTAGGCACTAATCTATTTTTAACATTTAATTAGTTGGGGTAATTTTTCAAATTACGAATGGAAGCTCGTTTCTTTTTTTTTCCTGGAATAAGGAAAACTGGTTTTTTTATCCATCCATTTATATTTATTCACTTGACCCAAATTGGAATTCTTTTTTTTTTTTCGACATCAAAATAAGATTGTACCGATCAGGAAAGCA
10 C008 (CHLORO8) C008 TTCACTTGACCCAAATTGGAATTCTTTTTTTTTTTTCGACATCAAAATAAGATTGTACCGATCAGGAAAGCAAAAAAAAATGTTATCTGAATTCTCCCTTGATACGACATGCTATTTTTTCCATTCATTCCTTTCAGGATCAGTCGTGGTCTTACAAACTCTACCGCAGATCTGGACGAATCCTTTTCTTCATACAAATGTGTAAAAGATGCTAGTCGCACTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCAACCCCCCCCAAAAAAAAAAGAACGTACTGCAAATATGTAGATACAATCAGAATAAAGAAAAAAATACAGTCGTGTGTGCGTCAGGGATAAATAGATCCATTTATCTATGAGAGAATTATATTTGGTCCATACACTGTTGTCAATATGATTATGAATTTTTCATATAGTCAAAAGAATAGAAAAAATAAATAAATAAAAAAGCTTAACCTCTTGGTTCATTAGTTCATACAATGA
11 C009 (CHLORO9) C009 AAAGCTTAACCTCTTGGTTCATTAGTTCATACAATGAATGAAAACTAAGCCAGTTCCAGTTAAGGTAATCTCAAATCTTTTTATACTTTTTAGATCCATTTTTTTTATGGCCTTTAATTTTTTATTTTTTTATGATGAAGAAATTATTCATAATAATATAATATTATTATAATATAATAATATATATATATTTTTTTTTATTCAGAATTATATATTATATTTATATACAGTATTATTCTTTTCTATATAACAATAACAGTAAAATTTTGTATTTATAAAAAAATTCGAATTTATATACTCTAGATCCAAAAAATTTTTCATAAATTTGTGTATGATTATAAAACATAGTAGTTGTTAGCAAGGTATTTTTTAGTATTCGTACCTTAGGAGGAATACTAATAATAAATAGAAATTATAATAAATCAAAATAAATATGATGGAAGTGAAAGAGAAGAGTAGA
12 C010 (CHLORO10) C010 AAATAAATATGATGGAAGTGAAAGAGAAGAGTAGATAAAATTTTATATCACGTTATATACGAGTCTTTCACATCCTCTTTTTTATATTTCATTAATTTCATTTCGTTTTAGTAAGACTTCATTCCGTAAAAATCCCAGCCTTCTTTGAAATATCATGAGCTGTTCTTGTTGGTTGAGCTCCTTTTTTAAGAAAATCGAGAATAGCAGAAAGGTTTAAAAAAGTTTGATTAGTTATGGGATCATAAAAACCCACCTTACTAAGATCTCTTCCTTCTCTTCGGTATCGAACATCAATTGCAAGGATTCGATAAACGGCTCGTTGGGATAGATGTATATGAATAATACCCCCCCTAGAAACGTATAAGAGGTTTTGGCCTCGTACGGCTCGAGAA
13 C011 (CHLORO11) C011 TTTGGCCTCGTACGGCTCGAGAAAAAAAATTCAAATAGTAAATTCAAATATTAAATAGAGAAATAAAAACATTAAATCAATTAGCCAGTATTAAAACCCTAAATATTTTTTCCATAAAAAGCATTCATAACATTCGTACTCTCGTAACTCAAGTTAAACAACTCTCAAATATCTCACCGGAGAATCCTTAAGTACTTTTTTTATTGAGTAGTCTCTAGCCCTTTTTTTGTTTGTCTCATTGCAAATTTTAGAATCAATTTTGATTCTTCAGTTTGATCTAGTTTTTCAAACAATTGAAAACAGGATTTCCTTTTTTCAAGATTCTTTATCCTTACTTTGAATCTTTAGGTTTAGACATGACTTCGGTGATATTGAATCGTTTTATTAAAAAAGGGCAGCAACAAGCCCCTTATTTTGTTTATGATTTCTGTTCTTTCTATACAAA
14 C012 (CHLORO12) C012 AAAGGGCAGCAACAAGCCCCTTATTTTGTTTATGATTTCTGTTCTTTCTATACAAAGAATCATACAAACGCTTGATTCACGCATGATAGACTTTTGATTCAAAGAATTTTACAATTTTAAGAAAATTTCCTTTTCCATTGTAAAATTGCTTGAAAGGACTTTTTTCAATATAAAAAGACTTACGAAGTTGTTCCAACTTATTAATTCGCACTAACCCTAAATCCTTACTCCTGCGAAAGGACTAAAAACTTTCTATTCTCCTCGAGCTCCATCCTGTACTCTTTTTTATATTACAAAAAAGTGTAGGACTCTTGTAAAATAGAATACAAAATGTCGAGCCAAGAGCACCTATATTCCTAATATAAAAATAAAAGTGGCGGATGAAAAAATCCACAGCAGATAATGTCCTTCAATTCAAGTCGTACGTTGCTTTCTACCACATCG
15 C013 (CHLORO13) C013 CCACAGCAGATAATGTCCTTCAATTCAAGTCGTACGTTGCTTTCTACCACATCGTTTTAAACGAAGTTTTACCATAACATTCCTCTAGTTTGTGTAATTGATTCAATGATGGAATCATGAATAGTCATAGTTCAGTCAGTATATAATAATCTATACCTTTTCTTTCTCTATGAATGGAATAGTTTATTTACGCGTAAAGGTTCGGTCAGAATGAAAATGAATTCCATATTAGTTTGAATAGAAATCTATATTTATATATAAATAAATAAATATAGATTTTTTTATTAAAACTCTTAGAATCTGCGGTTCTACCTTACTTACCCGCATCACACAAATTAAAAAAGCAAATAGATTTTTTTTGAATTCGGTTGAAATAATGAAAAATTAAGTTTATTCTTCTTTTCATTTCAATATTTTATTCTTAAAAAATTTGGATTTTTAAACAGAAAGAGAAAGATGGTGTACAAAGGCAATAGAAGATTG
16 C014 (CHLORO14) C014 TTTAAACAGAAAGAGAAAGATGGTGTACAAAGGCAATAGAAGATTGATTCTGTAATGACTGTACTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCTTACCGCTTGGCTACGCCCCATTTCGCTTTTTATTCAAGACTACTAAAAGAGTAATATTCCTATTGGTTGTTCGTCAATTCAAAATGAAATATAGATTACATTGGTGCTAAAGTTTTAACACGTGTAGATAGCAAATAAAACTTACTTTATTGATCATTACATAGAATTCAATTAAGATATTGTATGAAAATATTATTTCTTTCATTCTCATAAGAGAATAAAAGGATTTTTGATTGAGTAAGTTCAACAAAGTCTTTTTAGACTATCTTTCTTTATTTTTTCCTTATATAAAAAATATATTAAAAACTCAATCAAAATTAAATTATCCACAAGAACACCAATTT
17 C015 (CHLORO15) C015 AAATTAAATTATCCACAAGAACACCAATTTTTGTTATGCTTAATATATTTAATTTGATCTGTATTTTTTTTAATTCTACCCTTTTTTCAAGCACTTTTTTAGTCGCCAAATTGCCAGAGGCCTACGCCTTTTTGAATCCAATCGTAGATGTTATGCCCGTAATACCTCTTTTCTTTCTTCTCTTAGCCTTTGTTTGGCAAGCCGCTGTAAGTTTTCGATAAAATTCTTAATACTGTCTTAAACAAATTCACGATTTTGATTTTTCCAACAATTCAAAAGATCCAAAAAATCTTGACGTATGAACGAACTCTCAATTCAAACATTTAATTTTTTTGGTAGCCATACTAAATCTGGATCATTTCTATTTCCTAAATTTTATCCTCTTTTCCCTAAATGAAAGAACCTAATTAGA
18 C016 (CHLORO16) C016 GGTAGCCATACTAAATCTGGATCATTTCTATTTCCTAAATTTTATCCTCTTTTCCCTAAATGAAAGAACCTAATTAGATTCAAGTTCACCAAAAAAATATCTAGATGTTGGTATGCAAATCTGTTTGAATATGAAAGATTCGACTATTATCTTAATTACAAATAACTTTCTGAAACCTTTTTTTTTATTGGTATCAAAATTAGATATTTGATATAAAAATAGAGAATCTATTCTCTTTTTTTTTAGTAAGATCTTGGAGATTGTGTAATGCTTACTCTCAAACTTTTTGTATACACTGTAGTTATATTCTTTGTTTCTCTCTTCATATTTGGATTCCTATCTAATGATCCAGGACGTAATCCGGGACGTGAAGAATAAAAAAGAAAGTTTTTTTATTGCTTTATTTAATTCGTGGAAATGCTCGAATTTTATTAGGATTTTATCTATTACACACCATCAAAAGGAGAAGGGGAAAGAGAGGGATTCGAACCC
19 C017 (CHLORO17) C017 TCGAACCCTCGGTACGATTAACTCGTACAATGGATTAGCAATCCAACGCTTTAGTCCACTCAGCCATCTCTCCTAATCGAAAAGGGATATTTAATTAGGTTCCATAAAAAAAAAAAAAGGCTTGAAAAAGAACCTTCTCCACTTTATTCTTAAAAAGCTTTCTTTTTTTGTTATAGATATTCTTTATCTTTATATTATATATATATATATTTTTTTTCATTTTCTATATTTTTTTCTATATTTTATTATATTATTATATATATATATATTCTTTTTGATTATTTGATTATATAAATATATATATCCTATATTTAAATATATAATATATATATAATATATATCCTATATATAAATTATATAAATCCTCTATTATATATATAATATATATATAATATATATTATATAATATATATATTACTATTATATAACTGTTTTTATAGAACTTTCTCAGCAATTCTAGTTACATTAAAAATTTAGCTAAAGATTAGATAAAAAAGGCGCGAACTCAAA
20 C018 (CHLORO18) C018 GAACTTTCTCAGCAATTCTAGTTACATTAAAAATTTAGCTAAAGATTAGATAAAAAAGGCGCGAACTCAAAAAAGAAATAAATAAAACCATAATCATAGAAATAGAGAATCCTTTTTTTATTTTGTCTCGTCAAAACAAAAACACAAGTAAAAGATCTTTTTTATTTTAATAGCCTGGCCTGGTCAGTCCCCAGCCGGGCCTTTTTTTGTTAAAATTAAAAAGACTCATCCGATGGATTTTTAGATAAAAAAAGATTTGAAATAAAAAAAAAAGTGGAATTGAATTCGCTTTTACTAATTTTCTTAAGTCAACTCTAGTTTTTTCTAAATTTTTTCAGATTTTTTTATTACACCCCCGATTACTTTGTTCGACAAAAGGTTAATTTATATGCAATAATTGCATTGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTCCTTTAATCCCTTTAATAGTTAAAGGGTCTCTCGGTTTGATT

Total number of rows: 25316

Table truncated, full table size 7059 Kbytes.




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Supplementary data files not provided

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