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Status
Public on Feb 22, 2006
Title
Duke Operon Porcine 10.5K Oligo Array
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Sus scrofa Manufacturer
Oligos: Operon Printed by: Duke Microarray Facility
Manufacture protocol
Operon probes are designed from The TIGR Gene Index Database SsGI Release 5.0 released 10/1/02. The Oligo set contains 10,665 70mer probes representing 10,665 Sus scrofa gene sequences with a hit to a known human, mouse, or pig transcript and some sequences containing a 3' expressed sequence tag. Scanner used was a GenePix 4000B.
Catalog number
811302
Support
glass
Coating
polysine
Web link
http://www.operon.com/arrays/oligosets_pig.php Submission date
Feb 16, 2006
Last update date
Oct 14, 2012
Contact name
Heather Anne Himburg
Organization name
Duke Univeristy
Department
Biomedical Engineering
Lab
Morton Friedman
Street address
PO Box 90281
City
Durham
State/province
NC
ZIP/Postal code
27708
Country
USA
Samples (225)
GSM96949 , GSM97150 , GSM97151 , GSM97186 , GSM97187 , GSM97188
GSM97189 ,
GSM97190 ,
GSM97191 ,
GSM97192 ,
GSM97229 ,
GSM97230 ,
GSM97276 ,
GSM97315 ,
GSM97316 ,
GSM97317 ,
GSM97318 ,
GSM97319 ,
GSM97320 ,
GSM97321 ,
GSM97639 ,
GSM97642 ,
GSM97645 ,
GSM97647 ,
GSM97648 ,
GSM97649 ,
GSM97650 ,
GSM97651 ,
GSM97652 ,
GSM97653 ,
GSM97654 ,
GSM97656 ,
GSM97657 ,
GSM97658 ,
GSM97659 ,
GSM97660 ,
GSM97661 ,
GSM97662 ,
GSM97663 ,
GSM97664 ,
GSM97666 ,
GSM97667 ,
GSM97668 ,
GSM97669 ,
GSM97670 ,
GSM97671 ,
GSM97672 ,
GSM97673 ,
GSM97674 ,
GSM97675 ,
GSM97676 ,
GSM97677 ,
GSM97678 ,
GSM97730 ,
GSM97731 ,
GSM97732 ,
GSM97733 ,
GSM97734 ,
GSM97735 ,
GSM97736 ,
GSM269836 ,
GSM269837 ,
GSM269838 ,
GSM269839 ,
GSM269840 ,
GSM269841 ,
GSM269842 ,
GSM269843 ,
GSM269844 ,
GSM269845 ,
GSM269846 ,
GSM269847 ,
GSM269848 ,
GSM269849 ,
GSM269850 ,
GSM269851 ,
GSM269852 ,
GSM269853 ,
GSM269854 ,
GSM269855 ,
GSM269856 ,
GSM269857 ,
GSM269858 ,
GSM269859 ,
GSM269860 ,
GSM269861 ,
GSM269862 ,
GSM269863 ,
GSM269864 ,
GSM269865 ,
GSM269866 ,
GSM269867 ,
GSM277395 ,
GSM277396 ,
GSM277397 ,
GSM277398 ,
GSM277399 ,
GSM277400 ,
GSM277401 ,
GSM277402 ,
GSM277403 ,
GSM277404 ,
GSM277405 ,
GSM277406 ,
GSM488065 ,
GSM488066 ,
GSM488067 ,
GSM488068 ,
GSM488069 ,
GSM488070 ,
GSM488071 ,
GSM488072 ,
GSM488073 ,
GSM488177 ,
GSM488179 ,
GSM488181 ,
GSM488182 ,
GSM488183 ,
GSM488184 ,
GSM488203 ,
GSM488204 ,
GSM488205 ,
GSM488206 ,
GSM488207 ,
GSM488208 ,
GSM488209 ,
GSM488210 ,
GSM488211 ,
GSM488212 ,
GSM488213 ,
GSM488214 ,
GSM488215 ,
GSM488216 ,
GSM651604 ,
GSM651605 ,
GSM651606 ,
GSM651607 ,
GSM651608 ,
GSM651609 ,
GSM651610 ,
GSM651611 ,
GSM651612 ,
GSM651613 ,
GSM651614 ,
GSM651615 ,
GSM651616 ,
GSM651617 ,
GSM651618 ,
GSM651619 ,
GSM651620 ,
GSM651621 ,
GSM651622 ,
GSM651623 ,
GSM651624 ,
GSM651625 ,
GSM651626 ,
GSM651627 ,
GSM651628 ,
GSM651629 ,
GSM651630 ,
GSM651631 ,
GSM651632 ,
GSM651633 ,
GSM651634 ,
GSM651635 ,
GSM651636 ,
GSM651637 ,
GSM651638 ,
GSM651639 ,
GSM651640 ,
GSM651641 ,
GSM651642 ,
GSM651643 ,
GSM651871 ,
GSM651872 ,
GSM651873 ,
GSM651874 ,
GSM651875 ,
GSM651876 ,
GSM651877 ,
GSM651878 ,
GSM651879 ,
GSM651880 ,
GSM651881 ,
GSM651882 ,
GSM651883 ,
GSM651884 ,
GSM651885 ,
GSM651886 ,
GSM651887 ,
GSM651888 ,
GSM651889 ,
GSM651890 ,
GSM651891 ,
GSM651892 ,
GSM651893 ,
GSM651894 ,
GSM651895 ,
GSM651896 ,
GSM651897 ,
GSM651898 ,
GSM765354 ,
GSM765355 ,
GSM765356 ,
GSM765357 ,
GSM765358 ,
GSM765359 ,
GSM765360 ,
GSM765361 ,
GSM765362 ,
GSM765363 ,
GSM765364 ,
GSM765365 ,
GSM765366 ,
GSM765367 ,
GSM765368 ,
GSM765369 ,
GSM765370 ,
GSM765371 ,
GSM765372 ,
GSM765373 ,
GSM765374 ,
GSM765375 ,
GSM765376 ,
GSM765377 Series (7)
GSE4281 The Frequency Dependent Response of the Vascular Endothelium to Pulsatile Shear Stress
GSE10671 Endothelial Gene Expression in Regions of Defined Shear Exposure in the Porcine Iliac Arteries
GSE10938 In vivo endothelial transcriptional profiles of porcine coronary and iliac arteries
GSE19593 Endothelial transcriptional profiles of porcine coronary and iliac arteries passages 1 through 4
GSE26505 The Adaptive Response of Endothelial Cells to Increased Shear Stress
GSE26513 Endothelial Response to Increased Shear Stress Frequency
GSE30843 Effect of Continuous Suppression of Heparan Sulfate during Flow on Arterial Endothelial Function
Data table header descriptions ID Gene ID Gene Sequence number in Oligo Microarray Database
Description Gene Name if known
SPOT_ID
Data table ID Gene ID Description SPOT_ID SS00000001
TC51205
phosphorylase kinase gamma subunit [Sus scrofa]
TIGR:TC51205
SS00000002
TC47027
similar to GP|6841158|gb|AAF28932.1| HSPC254 {Homo sapiens}, partial (72%)
TIGR:TC47027
SS00000003
TC47370
homologue to SP|P04258|CA13_BOVIN Collagen alpha 1(III) chain. [Bovine] {Bos taurus}, partial (37%)
TIGR:TC47370
SS00000004
TC47495
homologue to SP|Q9XSJ7|CA11_CANFA Collagen alpha 1(I) chain precursor. [Dog] {Canis familiaris}, partial (25%)
TIGR:TC47495
SS00000005
TC47540
homologue to SP|P13213|SPRC_BOVIN SPARC precursor (Secreted protein acidic and rich in cysteine) (Osteonectin) (ON), partial (50%)
TIGR:TC47540
SS00000006
TC47544
homologue to GP|3005758|gb|AAC09367.1| RNA polymerase II 140 kDa subunit {Homo sapiens}, partial (13%)
TIGR:TC47544
SS00000007
TC47556
homologue to GP|13097759|gb|AAH03577.1 Unknown (protein for IMAGE:3544292) {Homo sapiens}, partial (41%)
TIGR:TC47556
SS00000008
TC47616
GP|1903418|gb|AAC48705.1| translation repressor NAT1 {Oryctolagus cuniculus}, partial (10%)
TIGR:TC47616
SS00000009
TC47765
homologue to GP|13377897|gb|AAK20892.1 Rab11 interacting protein Rip11a {Homo sapiens}, partial (11%)
TIGR:TC47765
SS00000010
TC47913
similar to GP|12053165|emb|CAB66762. hypothetical protein {Homo sapiens}, partial (53%)
TIGR:TC47913
SS00000011
TC47961
SP|O15371|IF37_HUMAN Eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66). [Human] {Homo sapiens}, partial (72%)
TIGR:TC47961
SS00000012
TC48043
homologue to GP|8100510|gb|AAF72335.1| Y-box protein ZONAB-A {Canis familiaris}, partial (26%)
TIGR:TC48043
SS00000013
TC48074
similar to PIR|A44128|A44128 (N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase (EC 2.4.1.92) -, partial (46%)
TIGR:TC48074
SS00000014
TC48182
homologue to GP|15080087|gb|AAH11822.1 Unknown (protein for MGC:19939) {Homo sapiens}, partial (36%)
TIGR:TC48182
SS00000015
TC48332
homologue to GP|7320865|emb|CAB81951.1 integral membrane transporter protein {Homo sapiens}, partial (83%)
TIGR:TC48332
SS00000016
TC48338
homologue to GP|13277864|gb|AAH03810.1 Similar to ATPase H+ transporting lysosomal (vacuolar proton pump) 42kD {Mus musculus}, partial (17%)
TIGR:TC48338
SS00000017
TC48359
similar to SP|P01267|THYG_BOVIN Thyroglobulin precursor. [Bovine] {Bos taurus}, partial (12%)
TIGR:TC48359
SS00000018
TC48524
similar to GP|18139943|gb|AAL60202.1 X-box binding protein processed isoform {Mus musculus}, partial (47%)
TIGR:TC48524
SS00000019
TC48577
weakly similar to GP|12746410|gb|AAK07483.1 coenzyme A diphosphatase {Mus musculus}, partial (95%)
TIGR:TC48577
SS00000020
TC48633
similar to PIR|T14774|T14774 hypothetical protein DKFZp434C211.1 - human (fragment), partial (30%)
TIGR:TC48633
10677 1012 Kbytes .Supplementary data files not provided
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