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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 08, 2018 |
| Title |
MinION (Mus musculus) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Mus musculus |
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| Submission date |
May 08, 2018 |
| Last update date |
May 08, 2018 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (405)
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GSM3135847, GSM3135848, GSM3135849, GSM3135850, GSM3135851, GSM3135852
GSM3135853, GSM3135854, GSM3135855, GSM3135856, GSM3135857, GSM3135858, GSM4194589, GSM4194590, GSM4194591, GSM4194592, GSM4194593, GSM4194594, GSM4194595, GSM4194596, GSM4194597, GSM4194598, GSM4194599, GSM4212722, GSM4212723, GSM4212724, GSM4212725, GSM4212726, GSM4212727, GSM4339250, GSM4339251, GSM4339252, GSM4339253, GSM4339254, GSM4339255, GSM4729688, GSM4729689, GSM4729690, GSM4729691, GSM4729692, GSM4729693, GSM4729694, GSM4729695, GSM4915155, GSM4915156, GSM4915157, GSM4915158, GSM4915159, GSM4915160, GSM4915161, GSM4915162, GSM4915163, GSM4915164, GSM4915165, GSM4915167, GSM4915168, GSM4915169, GSM4915171, GSM4915172, GSM4915173, GSM4915174, GSM4966279, GSM5051918, GSM5058061, GSM5075942, GSM5250597, GSM5325968, GSM5325969, GSM5325970, GSM5359387, GSM5359388, GSM5368724, GSM5368725, GSM5368726, GSM5368727, GSM5368728, GSM5368729, GSM5368730, GSM5368731, GSM5410604, GSM5410605, GSM5410606, GSM5410607, GSM5410608, GSM5410609, GSM5410610, GSM5410611, GSM5410612, GSM5410613, GSM5410614, GSM5410615, GSM5410616, GSM5410617, GSM5410618, GSM5410619, GSM5410620, GSM5510254, GSM5510255, GSM5510256, GSM5510257, GSM5708876, GSM5708877, GSM5708878, GSM5708879, GSM5708880, GSM5708881, GSM5708882, GSM5708883, GSM5708884, GSM5708885, GSM5708886, GSM5708887, GSM5723226, GSM5723227, GSM5723228, GSM5723229, GSM5723230, GSM5723231, GSM5828345, GSM5828346, GSM5839631, GSM5839632, GSM5839633, GSM5839634, GSM5841801, GSM5841802, GSM5884257, GSM5884258, GSM5884259, GSM5884260, GSM5884261, GSM5884262, GSM5884263, GSM5884264, GSM5884265, GSM5884266, GSM5884267, GSM5884268, GSM5884269, GSM5884270, GSM6032858, GSM6032859, GSM6032860, GSM6032861, GSM6032862, GSM6032863, GSM6032864, GSM6032865, GSM6032866, GSM6032867, GSM6032868, GSM6032869, GSM6032870, GSM6032871, GSM6032872, GSM6032873, GSM6032874, GSM6032875, GSM6032876, GSM6032877, GSM6032878, GSM6032879, GSM6032880, GSM6032881, GSM6032882, GSM6032883, GSM6171433, GSM6171434, GSM6171435, GSM6171436, GSM6171437, GSM6171438, GSM6171439, GSM6171440, GSM6171441, GSM6171442, GSM6171443, GSM6171444, GSM6171445, GSM6171446, GSM6171447, GSM6171448, GSM6171449, GSM6171450, GSM6171451, GSM6171452, GSM6171453, GSM6171454, GSM6171455, GSM6171456, GSM6171457, GSM6171458, GSM6254260, GSM6254261, GSM6254262, GSM6254263, GSM6254264, GSM6254265, GSM6254266, GSM6254267, GSM6254268, GSM6254269, GSM6338478, GSM6338479, GSM6338480, GSM6338481, GSM6338482, GSM6338483, GSM6338484, GSM6338485, GSM6500721, GSM6500722, GSM6500723, GSM6500724, GSM6500725, GSM6500726, GSM6500727, GSM6500728, GSM6500729, GSM6500730, GSM6500731, GSM6500732, GSM6500733, GSM6500734, GSM6500735, GSM6617129, GSM6617130, GSM6617131, GSM6617132, GSM6617133, GSM6617134, GSM6617135, GSM6617136, GSM6617137, GSM6617138, GSM6617139, GSM6617140, GSM6631026, GSM6631027, GSM6631028, GSM6631029, GSM6631030, GSM6631031, GSM6631032, GSM6631033, GSM6631034, GSM6631035, GSM6631036, GSM6631037, GSM6634283, GSM6634284, GSM6658040, GSM6658041, GSM6658042, GSM6658043, GSM6658044, GSM6658045, GSM6658046, GSM6658047, GSM6658048, GSM6658049, GSM6658050, GSM6658051, GSM6658052, GSM6658053, GSM6658054, GSM6658055, GSM6658056, GSM6658057, GSM6658058, GSM6658059, GSM6658060, GSM6658061, GSM6658062, GSM6658063, GSM6658064, GSM6658065, GSM6674451, GSM6674452, GSM6674453, GSM6674454, GSM6674455, GSM6674456, GSM6674457, GSM6674458, GSM6674459, GSM6674460, GSM6674461, GSM6674462, GSM6674463, GSM6674464, GSM6674465, GSM6674466, GSM6845639, GSM6845640, GSM6845641, GSM6845642, GSM6845643, GSM6845644, GSM6845645, GSM6845646, GSM7100057, GSM7100058, GSM7100059, GSM7100060, GSM7100061, GSM7100062, GSM7100063, GSM7100064, GSM7100065, GSM7112214, GSM7112215, GSM7112216, GSM7112217, GSM7112218, GSM7112219, GSM7112220, GSM7112221, GSM7112222, GSM7112223, GSM7115958, GSM7115959, GSM7115960, GSM7165948, GSM7165949, GSM7165950, GSM7165951, GSM7165952, GSM7165953, GSM7437649, GSM7437650, GSM7437651, GSM7437652, GSM7437653, GSM7437654, GSM7437655, GSM7437656, GSM7585176, GSM7585177, GSM7585178, GSM7585179, GSM7585180, GSM7585181, GSM7585182, GSM7585183, GSM7585184, GSM7593856, GSM7593857, GSM7593858, GSM7593859, GSM7688874, GSM7688875, GSM7863696, GSM7863697, GSM7863698, GSM7916544, GSM7916545, GSM7916546, GSM7916547, GSM7916548, GSM7916549, GSM7916550, GSM7916551, GSM7916552, GSM7916553, GSM7916554, GSM7916555, GSM7916556, GSM7916557, GSM8140072, GSM8140073, GSM8140074, GSM8140075, GSM8140076, GSM8140077, GSM8140078, GSM8140079, GSM8140080, GSM8197727, GSM8197728, GSM8197729, GSM8197730, GSM8197731, GSM8197732, GSM8197733, GSM8197734, GSM8197735, GSM8197736, GSM8197737, GSM8197738, GSM8197739, GSM8197740, GSM8197741, GSM8197742, GSM8197743, GSM8197744, GSM8381343, GSM8381344, GSM8403313, GSM8453702, GSM8453703, GSM8453704, GSM8453705, GSM8453706, GSM8453707
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| Series (63)
|
| GSE114157 |
Insights into the Biology of Hearing and Deafness Revealed by Single-Cell RNA Sequencing |
| GSE127059 |
CircRNAs full-length sequencing in the human and mouse brain samples using Oxford Nanopore Technology |
| GSE140890 |
Parallel scRNA-seq and genetic recording reveals lineage decisions in early mouse embryogenesis |
| GSE141750 |
Inflammation drives alternative first exon usage of critical immune genes including Aim2 [nanopore] |
| GSE141754 |
Inflammation drives alternative first exon usage of critical immune genes including Aim2 |
| GSE145914 |
Rbfox contributes to a conservative program of self-antigen splicing in thymic epithelial cells [mTEC_ONT_RNAseq] |
| GSE145931 |
Rbfox contributes to a conservative program of self-antigen splicing in thymic epithelial cells |
| GSE156369 |
Examining RNA Transcript Changes in Stem Cells Undergoing Differentiation, Using Short and Long Reads Sequencing Technologies [Nanopore long reads] |
| GSE156371 |
Examining RNA Transcript Changes in Stem Cells Undergoing Differentiation, Using Short and Long Reads Sequencing Technologies |
| GSE158985 |
Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data |
| GSE161818 |
DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations |
| GSE161822 |
DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations |
| GSE165919 |
eccDNA biogenesis and its role in innate immunity |
| GSE166583 |
Induction of a chromatin boundary in vivo upon insertion of a TAD border (MinION-nCATS) |
| GSE166584 |
Induction of a chromatin boundary in vivo upon insertion of a TAD border |
| GSE172253 |
Nonlinear control of transcription through promoter-enhancer interactions [Nanopore] |
| GSE172257 |
Nonlinear control of transcription through promoter-enhancer interactions |
| GSE174754 |
Phospho-RNA sequencing with CircAID-p-seq |
| GSE176176 |
Mechanisms of interindividual epigenetic variability at CpG dense transposable elements |
| GSE178728 |
An integrated proteome and transcriptome of B cell maturation defines poised activation states of transitional and mature B cells |
| GSE179145 |
Promoting axon regeneration by enhancing the non-coding function of the injury-responsive coding gene Gpr151 |
| GSE181746 |
Determination of transcript's polyA tail length in Wild-Type and Mov10 KO mouse ESCs. |
| GSE183681 |
Epigenetic Remodeling by Vitamin C Potentiates Plasma Cell Differentiation |
| GSE189872 |
Nano-TRAP Input and IP sequencing of WT and Rpl3l-/- mouse hearts |
| GSE190409 |
Targeted nanopore DNA sequencing of mouse naive CD4 T cells activated under Treg polarizing conditions |
| GSE190512 |
Polypyrimidine Tract Binding Protein 1 regulates the activation of mouse CD8 T cells |
| GSE194113 |
Context-dependent enhancer function revealed by targeted inter-TAD relocation [nCATS] |
| GSE194114 |
Context-dependent enhancer function revealed by targeted inter-TAD relocation |
| GSE195511 |
Triple transgenic reprogrammable mouse model reveals no evidence of epigenetic memory in reprogrammed cells/induced pluripotent stem cells |
| GSE195618 |
Systematic comparison of tools used for m6A mapping from nanopore direct RNA sequencing |
| GSE200412 |
Determination of MHV RNA poly(A) tail length and 3' end additions upon 17-CL1 cells infection [17-CL1_WT] |
| GSE200413 |
Role of TUT4 and TUT7 on the regulation of MHV poly(A) tail length and 3' end additions [17-CL1_Mutants] |
| GSE200414 |
Determination of MHV RNA poly(A) tail length and 3' end additions upon NCTC cells infection |
| GSE200416 |
Determination of MHV RNA poly(A) tail length and 3' end additions in infected 17-CL1 and NCTC cells |
| GSE206453 |
Vitamin C Potentiates Plasma Cell Differentiation via TET-mediated DNA modification [Bisulfite-Seq] |
| GSE208177 |
Effect of aging on mitochondrial gene expression using C57BL/6N liver mitochondria |
| GSE211760 |
Simultaneous identification of m6A and m5C reveals coordinated RNA modification at single-molecule resolution [mouse frontal cortex] |
| GSE211762 |
Simultaneous identification of m6A and m5C reveals coordinated RNA modification at single-molecule resolution |
| GSE214874 |
Post-transcriptional regulation of Ribosome Biogenesis during differentiation [dRNA-seq] |
| GSE214875 |
Post-transcriptional regulation of Ribosome Biogenesis during differentiation |
| GSE215276 |
Translating ribosome affinity purification analysis of dopaminergic neurons of the mouse ventral midbrain with age and alpha-synuclein overexpression. |
| GSE215357 |
Merging short and stranded long reads improves transcript assembly |
| GSE216065 |
A pioneer factor locally opens compacted chromatin to enable targeted ATP-dependent nucleosome remodeling |
| GSE221122 |
Gene body DNA hydroxymethylation restricts magnitude of transcriptional changes during aging [direct RNA-seq] |
| GSE221124 |
Gene body DNA hydroxymethylation restricts magnitude of transcriptional changes during aging. |
| GSE226689 |
Revisiting chromatin packaging in mouse sperm |
| GSE227407 |
Electroacupuncture Alleviates Ulcerative Colitis by Targeting CXCL1: Evidence from the Transcriptome and Validation |
| GSE228001 |
An extended wave of global mRNA deadenylation sets up a switch in translation regulation across the mammalian oocyte-to-embryo transition |
| GSE228168 |
Full-length Sequencing of Non-capped RNAs Reveals the Heterogeneity of RNA Processing and Novel Classes of Noncoding RNAs |
| GSE229597 |
Transcriptomic profiling of long non-coding RNAs identifies circRmst as a regulator of midbrain dopamine neuron migration |
| GSE233836 |
Detailed analysis of the murine-aged brain transcriptome [ONT] |
| GSE233837 |
Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain |
| GSE236910 |
Sciatic nerve injury-responsive differential CSDE1 association efficiency of ribosomal protein coding mRNAs |
| GSE237046 |
Sciatic nerve injury-responsive differential mRNA profile and ribosome association efficiency of injury-induced mRNA |
| GSE240249 |
Revisiting chromatin packaging in mouse sperm [Nanopore-methylation] |
| GSE246151 |
Enhanced detection of RNA modifications with high-accuracy nanopore RNA basecalling models |
| GSE248540 |
Single molecule DNA methylation reveals unique epigenetic identity profiles of T helper cells |
| GSE261301 |
Post-transcriptional regulation by the gut microbiota decoded by nanopore direct RNA sequencing |
| GSE263741 |
Apobec-Mediated Retroviral Hypermutation In Vivo is Dependent on Mouse Strain |
| GSE271659 |
Total RNA-seq and long-read RNAseq (Nanopore) upon Son KD in mouse embryonic stem cells |
| GSE272482 |
CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length [nCATS] |
| GSE272483 |
CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length |
| GSE274619 |
Ribotag-RNA sequencing data using Csde1-KD dorsal root ganglion(DRG) neurons |
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| Supplementary data files not provided |
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