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Platform GPL24234 Query DataSets for GPL24234
Status Public on Oct 18, 2019
Title 037907-Agilent Fragaria x ananassa FraGenomics 35k [Feature number version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Fragaria x ananassa
Manufacturer Agilent
Manufacture protocol http://www.agilent.com/
 
Description This array of 60-mer probes is based on the Nimblegen Array 110713_Fragaria_JMB_exp (GPL23035). The Nimblegen design files attached to this record contain accurate gene description and probe sequence information for this Agilent array. However, the Agilent array does not contain all probes listed in the .ndf file and includes additional probes not listed in the .ndf file. Probe sequences for non-control probes are available in the platform table and in the supplementary file 037907_Annotation.txt available at the foot of this record.
 
Submission date Nov 06, 2017
Last update date Oct 20, 2019
Contact name Francisco Javier Molina-Hidalgo
Organization name University of Cordoba
Department Biochemistry and molecular biology
Street address Edif. Severo Ochoa (C6.) Planta Baja-Ala Norte Campus de Rabanales
City CÓRDOBA
State/province Cordoba
ZIP/Postal code 14071
Country Spain
 
Samples (12) GSM2843293, GSM2843294, GSM2843295, GSM2843296, GSM2843297, GSM2843298 
Series (2)
GSE106583 Role of Fragaria FaPRE1 in the plant development [FaPRE1-overexpression]
GSE125995 Role of Fragaria FaPRE1 in fruit ripening [FaPRE1-RNAi]

Data table header descriptions
ID Feature number
ProbeName
SystematicName
CONTROL_TYPE
SEQUENCE
SEQ_ID
Description
SPOT_ID

Data table
ID ProbeName SystematicName CONTROL_TYPE SEQUENCE SEQ_ID Description SPOT_ID
1 GE_BrightCorner GE_BrightCorner Other * control
2 DarkCorner DarkCorner Other * control
3 DarkCorner DarkCorner Other * control
4 FragP00175852 gene17538 Probe TCATATACACCCAAACCTGCCAGACTGCGATAACGTTTGGAGCTCTTTTAACGAGCACAA GENE17538 Mediator of RNA polymerase II transcription subunit 13 (probable)
5 FragP00083359 gene08243 Probe GCTATTATAGATTCTTTGGGGTCCCAAAGTGCTCTCTTGCGGCACGAGGTTGCTTATGTG GENE08243 Deoxyhypusine hydroxylase (DOHH) (similar to)
6 FragP00198823 gene19844 Probe TACCCAGAGAAGACAAGTACGTACTACATTGTAAATGTGCCTTACATATTCTCAGCTTGT GENE19844 SEC14-like protein 1 (probable)
7 FragP00244778 gene24476 Probe CAGTGACATTACCAATGGCGGCAAGCTTAGAATCCGAGAGTAGTTCCGCCGCTCCTCCTC GENE24476 60S ribosomal protein L7a (probable)
8 FragP00178973 gene17852 Probe GGACCTCCATTCCTTTGATCGTTTACTGTAGTCTGCCTGCCATCTGTCTTCTGACCGGGA GENE17852 Cellulose synthase A catalytic subunit 2 [UDP-forming] (AtCesA2) (put
9 FragP00059577 gene05852 Probe GGATGTCAAGGATAACCCCGTAATGCTTTATATGAAAGGAGTGCCTAATGCTCCTCAGTG GENE05852 Monothiol glutaredoxin-S15 (AtGrxS15) (similar to)
10 FragP00057743 gene05667 Probe GGTGGGGTTGTACTGGTCAGTCACGACTCTAGGCTTATTTCACGTGTGTGTGAGGATGAA GENE05667 ABC transporter F family member 4 (ABC transporter ABCF.4) (putative)
11 FragP00049971 gene04885 Probe GAGGAGGTGGACTGGCCTTGCTGGTCAGTAGTGAACCTTGGATTGTTGGTGGAGATTTCA GENE04885 Selenoprotein P (SeP), Precursor (probable)
12 FragP00086003 gene08508 Probe TTTGTGCACATTTTCGGATACGAATGCGGCGTTGAAATCGATGAATTTATGAATGGGTTG GENE08508 Exonuclease 1 (probable)
13 FragP00041584 gene04045 Probe TTGGATGGAATGGGAGAAGCGATACCATGCGCATTACAATTCAGATGTCTATGAAGCCGT GENE04045 Something about silencing protein 10 (probable)
14 FragP00307856 gene30816 Probe TGCCTGTGCTCTTGGACTGGCGAGCCGGAGAGCTAGCTCGTTATGCTGCCATGTTGGTGC GENE30816 Zinc finger protein 710 (probable)
15 FragP00326354 gene32675 Probe TGTACCCACCAGCCTCCGACGAGTTGAATACTAGTCTCTACATCGTTCGACAACGCCTGA GENE32675 Palladin (probable)
16 FragP00072384 gene07138 Probe AATGCTGAAGAGATGCCTACAGATCCCGTATCTGACCCTATAAGTGATTCCAAGGTTCTT GENE07138 Putative membrane protein ycf1 (probable)
17 FragP00188678 gene18827 Probe ATCCAAGCATGAGGACTAAGGGGAGTGCGAATTGTACTAGTGTGATTCACTGTTACAAAA GENE18827 BTB/POZ domain-containing protein KCTD6 (probable)
18 FragP00273269 gene27339 Probe ATGATCAATTGAGGAGTGAGTACGAATCAGTTAAACGAACTGCCATCCAACCTGCAACCA GENE27339 Ezrin (probable)
19 FragP00070392 gene06939 Probe GGAGTGTGGCATTTGCTTAGAGCCGTGTACCAAAATGGTCTTGCCTAATTGCTGTCATGA GENE06939 E3 ubiquitin-protein ligase RNF8 A (probable)
20 FragP00160376 gene15980 Probe GGTCAGCATATCAACATTGGGAAGCGCTTGCAGCGCGGATTGCCTAAGGGTAGTGGTGGT GENE15980 Putative disease resistance protein RGA3 (probable)

Total number of rows: 62976

Table truncated, full table size 9416 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL24234_037907_Annotation.txt.gz 1.4 Mb (ftp)(http) TXT
GPL24234_110713_Fragaria_JMB_exp.ndf.gz 8.0 Mb (ftp)(http) NDF
GPL24234_110713_Fragaria_JMB_exp.ngd.gz 560.7 Kb (ftp)(http) NGD

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