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Platform GPL20186 Query DataSets for GPL20186
Status Public on May 12, 2015
Title Agilent-034939 Bacillus_cereus_ATCC14579 [Probe Name Version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Bacillus cereus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034939 or 2534939.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date May 11, 2015
Last update date May 12, 2015
Contact name Tomoko TAMURA
E-mail(s) t3tamura@nodai.ac.jp
Organization name Tokyo University of Agriculture
Department Nutritional Science and Food Safety
Street address 1-1-1 Sakuragaoka Setagaya-ku
City Tokyo
ZIP/Postal code 156-8502
Country Japan
 
Samples (8) GSM1680940, GSM1680941, GSM1680942, GSM1680943, GSM1680944, GSM1680945 
Series (1)
GSE68767 Global gene expression analysis of Bacillus cereus to proanthocyanidin exposure
Relations
Alternative to GPL20185 (Feature Number Version)

Data table header descriptions
ID Agilent Probe Name
CONTROL_TYPE
GENOME_ACC
GENE
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location.NCBI Bacillus cereus ATCC 14579, complete genome 2011May
SEQUENCE Sequence
SPOT_ID

Data table
ID CONTROL_TYPE GENOME_ACC GENE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE SPOT_ID
GE_BrightCorner pos control
DarkCorner pos control
MBC3505_2 FALSE AE016877.1 AAP10643.1 lcl|AE016877.1_cdsid_AAP10643.1|cdsid|AAP10643.1 unmapped TCATATACGAGCACAAGAACTTTTTTCCAGAAAAAATTACAGTGTTACTTTTTTGTTACA AAP10643.1
MBC1835_2 FALSE AE016877.1 AAP08955.1 lcl|AE016877.1_cdsid_AAP08955.1|cdsid|AAP08955.1 unmapped TCACATGGAGCACAAGCAGCTTTAGATCAAATGAAGTATGAAATTGCACAAGAGTTCGGT AAP08955.1
MBC1468_3 FALSE AE016877.1 AAP08587.1 lcl|AE016877.1_cdsid_AAP08587.1|cdsid|AAP08587.1 unmapped GAAACGAGACGATACGTCAGCACGTAAGTTGCAAAATGAGGTGAATTATACAGAGGTCGT AAP08587.1
MBC1425_2 FALSE AE016877.1 AAP08543.1 lcl|AE016877.1_cdsid_AAP08543.1|cdsid|AAP08543.1 unmapped TATTCACCGTACGTATGATGAGCTCGGAAAAGAAGTGGATAGTCAAGGTGCGATTGTAGA AAP08543.1
MBC457_3 FALSE AE016877.1 AAP07571.1 lcl|AE016877.1_cdsid_AAP07571.1|cdsid|AAP07571.1 unmapped ACGAGTGGATCGATGGGAATATGGGAGAAATATATGGCACGTAGCTTCTTTTTCTGGATG AAP07571.1
MBC4243_3 FALSE AE016877.1 AAP11382.1 lcl|AE016877.1_cdsid_AAP11382.1|cdsid|AAP11382.1 unmapped CAAACATGATGGACGGCTTCGTAACAGCAATTCGTCATGCATTAGACGAAAATGGTTTTG AAP11382.1
MBC3099_1 FALSE AE016877.1 AAP10234.1 lcl|AE016877.1_cdsid_AAP10234.1|cdsid|AAP10234.1 unmapped GTTAGGGTGAAAATAACGCCGAATTATAGCGGGAATTCAAAACGTCCAGACAGTGTTGTT AAP10234.1
MBC4993_1 FALSE AE016877.1 AAP12140.1 lcl|AE016877.1_cdsid_AAP12140.1|cdsid|AAP12140.1 unmapped ATAGTTTAGCAATGGCACAAAAAGCCGCTTCAGAAGGAATACATACAATTGTTGCAACGC AAP12140.1
MBC3304_2 FALSE AE016877.1 AAP10441.1 lcl|AE016877.1_cdsid_AAP10441.1|cdsid|AAP10441.1 unmapped TGCCTAAATGGACTGCACATATAGTAGCTACGGTCTTTTCCCTTGGTATTACCTATCAAG AAP10441.1
MBC4418_3 FALSE AE016877.1 AAP11557.1 lcl|AE016877.1_cdsid_AAP11557.1|cdsid|AAP11557.1 unmapped TTTAGAGGTTACTTTACTTAAACGTTCTGCGCAAGGAGTAGAGTTAACGGAGGCAGGAGA AAP11557.1
MBC2572_1 FALSE AE016877.1 AAP09704.1 lcl|AE016877.1_cdsid_AAP09704.1|cdsid|AAP09704.1 unmapped CTAATGCAGTCGTTGTAGCAGATGTTGATACGTATGAACGCCTCAAACAAATCGGAAAGC AAP09704.1
MBC3466_1 FALSE AE016877.1 AAP10604.1 lcl|AE016877.1_cdsid_AAP10604.1|cdsid|AAP10604.1 unmapped AGGGAAATCAAATGAAGAAATTACACAATTGTTAGGAGCCCCAACGGAAACGAGAAGTGG AAP10604.1
MBC3419_3 FALSE AE016877.1 AAP10557.1 lcl|AE016877.1_cdsid_AAP10557.1|cdsid|AAP10557.1 unmapped TGCATCTGGTGCTATGCTTGTAACACGTTTGTTTTATCAGGCACAAAGAGAGTCTATGAA AAP10557.1
MBC4982_3 FALSE AE016877.1 AAP12129.1 lcl|AE016877.1_cdsid_AAP12129.1|cdsid|AAP12129.1 unmapped CAGCGCCAAGTGATGCAAGCTGTTATTAAGAAAGGCGCTACTTTCTCTTCTTTAACAAGT AAP12129.1
MBC5019_2 FALSE AE016877.1 AAP12166.1 lcl|AE016877.1_cdsid_AAP12166.1|cdsid|AAP12166.1 unmapped ACGATGGAAACACCCGCTATTAGGTGACATTTCACCATGTGAGTTTATTCCAATTGTAGA AAP12166.1
MBC265_1 FALSE AE016877.1 AAP07379.1 lcl|AE016877.1_cdsid_AAP07379.1|cdsid|AAP07379.1 unmapped GCGGTGGTATTTCTAATGCAGAACAGGCGAAAGAAATGGCACAATATGCTGATACAGTAG AAP07379.1
MBC530_2 FALSE AE016877.1 AAP07644.1 lcl|AE016877.1_cdsid_AAP07644.1|cdsid|AAP07644.1 unmapped GCTTATCCATCACCATACCCTGTAACGTATCCAATGCCATACCCAGGTTATCAGCAAATA AAP07644.1
MBC3220_1 FALSE AE016877.1 AAP10356.1 lcl|AE016877.1_cdsid_AAP10356.1|cdsid|AAP10356.1 unmapped TGGATTTGCGTACGGATCACAAGGAGATAAAGTGAAGGGGAAAGAATTTGGTGTAGCTAT AAP10356.1

Total number of rows: 15242

Table truncated, full table size 2489 Kbytes.




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