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Platform GPL20008 Query DataSets for GPL20008
Status Public on Apr 10, 2015
Title Agilent-036891 Babesia bovis_UP array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Babesia bovis
Manufacturer Agilent Technologies
Manufacture protocol Custom B. bovis microarray slides were manufactured using a proprietary non-contact industrial inkjet printing process, in which oligo monomers were deposited uniformly onto specially-prepared glass slides. This in situ synthesis process printed 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. The precise inkjet process enabled the delivery of extremely small, accurate volumes (picoliters) of the chemicals to be spotted. Standard phosphoramidite chemistry was used in the reactions which allowed for very high coupling efficiencies to be maintained at each step in the synthesis of the full-length oligonucleotide. The general cycle and process of oligo synthesis was repeated 60 times.
Features were numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
 
 
Submission date Apr 08, 2015
Last update date Apr 10, 2015
Contact name Ingrid Rossouw
E-mail(s) s24075681@tuks.co.za
Organization name University of Pretoria
Department Genetics
Street address Lynnwoodroad
City Pretoria
State/province Gauteng
ZIP/Postal code 0002
Country South Africa
 
Samples (6) GSM1653276, GSM1653277, GSM1653278, GSM1653279, GSM1653280, GSM1653281
Series (1)
GSE67677 Morphological and molecular descriptors of the developmental cycle of Babesia divergens parasites in human erythrocytes

Data table header descriptions
ID RefSeq ID
SPOT_ID Spot identifier

Data table
ID SPOT_ID
NC_0099021_cdsid_YP_0015041061 NC_0099021_cdsid_YP_0015041061
NC_0099021_cdsid_YP_0015041071 NC_0099021_cdsid_YP_0015041071
NC_0099021_cdsid_YP_0015041081 NC_0099021_cdsid_YP_0015041081
NZ_AAXT00000000_1002573-100... NZ_AAXT00000000_1002573-100...
NZ_AAXT00000000_1006991-100... NZ_AAXT00000000_1006991-100...
NZ_AAXT00000000_1013041-101... NZ_AAXT00000000_1013041-101...
NZ_AAXT00000000_1015445-101... NZ_AAXT00000000_1015445-101...
NZ_AAXT00000000_1029049-102... NZ_AAXT00000000_1029049-102...
NZ_AAXT00000000_1033314-103... NZ_AAXT00000000_1033314-103...
NZ_AAXT00000000_1037009-104... NZ_AAXT00000000_1037009-104...
NZ_AAXT00000000_1044075-104... NZ_AAXT00000000_1044075-104...
NZ_AAXT00000000_1045409-104... NZ_AAXT00000000_1045409-104...
NZ_AAXT00000000_10469-11170 NZ_AAXT00000000_10469-11170
NZ_AAXT00000000_1047527-104... NZ_AAXT00000000_1047527-104...
NZ_AAXT00000000_105390-106097 NZ_AAXT00000000_105390-106097
NZ_AAXT00000000_1055092-105... NZ_AAXT00000000_1055092-105...
NZ_AAXT00000000_1069754-107... NZ_AAXT00000000_1069754-107...
NZ_AAXT00000000_1074147-107... NZ_AAXT00000000_1074147-107...
NZ_AAXT00000000_1077149-107... NZ_AAXT00000000_1077149-107...
NZ_AAXT00000000_1081499-108... NZ_AAXT00000000_1081499-108...

Total number of rows: 3248

Table truncated, full table size 196 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL20008_all_transcripts_custom_array.txt.gz 724.0 Kb (ftp)(http) TXT

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