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Status
Public on Mar 16, 2012
Title
Agilent-026441 Gallus gallus (Chicken) Oligo Microarray v2 (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Gallus gallus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
G. gallus (Chicken) Oligo Microarray v2
Submission date
Mar 16, 2012
Last update date
Mar 16, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (287)
GSM896893 , GSM896894 , GSM896895 , GSM896896 , GSM896897 , GSM896898
GSM896899 ,
GSM896900 ,
GSM896901 ,
GSM896902 ,
GSM896903 ,
GSM896904 ,
GSM896905 ,
GSM896906 ,
GSM896907 ,
GSM896908 ,
GSM896909 ,
GSM896910 ,
GSM916467 ,
GSM916468 ,
GSM916469 ,
GSM916470 ,
GSM916471 ,
GSM916472 ,
GSM916473 ,
GSM916474 ,
GSM916475 ,
GSM916476 ,
GSM916477 ,
GSM916478 ,
GSM916479 ,
GSM916480 ,
GSM1132949 ,
GSM1132950 ,
GSM1132951 ,
GSM1132952 ,
GSM1132953 ,
GSM1132954 ,
GSM1132955 ,
GSM1132956 ,
GSM1183251 ,
GSM1183252 ,
GSM1183253 ,
GSM1183254 ,
GSM1183255 ,
GSM1183256 ,
GSM1183257 ,
GSM1282822 ,
GSM1282823 ,
GSM1356933 ,
GSM1356934 ,
GSM1356935 ,
GSM1356936 ,
GSM1356937 ,
GSM1356938 ,
GSM1377278 ,
GSM1377279 ,
GSM1377280 ,
GSM1442042 ,
GSM1442043 ,
GSM1442044 ,
GSM1442045 ,
GSM1442046 ,
GSM1442047 ,
GSM1442048 ,
GSM1442049 ,
GSM1442050 ,
GSM1442051 ,
GSM1442052 ,
GSM1442053 ,
GSM1442054 ,
GSM1442055 ,
GSM1442056 ,
GSM1442057 ,
GSM1442058 ,
GSM1442059 ,
GSM1442060 ,
GSM1442061 ,
GSM1442062 ,
GSM1442063 ,
GSM1442064 ,
GSM1442065 ,
GSM1442066 ,
GSM1442067 ,
GSM1442068 ,
GSM1442069 ,
GSM1442070 ,
GSM1442071 ,
GSM1442072 ,
GSM1442073 ,
GSM1442074 ,
GSM1442075 ,
GSM1442076 ,
GSM1442077 ,
GSM1499802 ,
GSM1499803 ,
GSM1499804 ,
GSM1499805 ,
GSM1499806 ,
GSM1499807 ,
GSM1499808 ,
GSM1499809 ,
GSM1499810 ,
GSM1499811 ,
GSM1499812 ,
GSM1499813 ,
GSM1499814 ,
GSM1499815 ,
GSM1499816 ,
GSM1507335 ,
GSM1507336 ,
GSM1507337 ,
GSM1507338 ,
GSM1507339 ,
GSM1507340 ,
GSM1507341 ,
GSM1507342 ,
GSM1507343 ,
GSM1507344 ,
GSM1507345 ,
GSM1507346 ,
GSM1507347 ,
GSM1507348 ,
GSM1507349 ,
GSM1507350 ,
GSM1507351 ,
GSM1507352 ,
GSM1507353 ,
GSM1507354 ,
GSM1507355 ,
GSM1507356 ,
GSM1507357 ,
GSM1507358 ,
GSM1507359 ,
GSM1507360 ,
GSM1507361 ,
GSM1507362 ,
GSM1507363 ,
GSM1507364 ,
GSM1507365 ,
GSM1507366 ,
GSM1507367 ,
GSM1507368 ,
GSM1507369 ,
GSM1507370 ,
GSM1507371 ,
GSM1507372 ,
GSM1507373 ,
GSM1507374 ,
GSM1507375 ,
GSM1507376 ,
GSM1507377 ,
GSM1507378 ,
GSM1507379 ,
GSM1507380 ,
GSM1507381 ,
GSM1507382 ,
GSM1507383 ,
GSM1507384 ,
GSM1507385 ,
GSM1507386 ,
GSM1507387 ,
GSM1507388 ,
GSM1507389 ,
GSM1507390 ,
GSM1507391 ,
GSM1507392 ,
GSM1507393 ,
GSM1507394 ,
GSM1507395 ,
GSM1507396 ,
GSM1507397 ,
GSM1507398 ,
GSM1607595 ,
GSM1607596 ,
GSM1607597 ,
GSM1607598 ,
GSM1619789 ,
GSM1619790 ,
GSM1619791 ,
GSM1619792 ,
GSM1619793 ,
GSM1619794 ,
GSM1619795 ,
GSM1619796 ,
GSM1619797 ,
GSM1619798 ,
GSM1619799 ,
GSM1619800 ,
GSM1619801 ,
GSM1619802 ,
GSM1619803 ,
GSM1619804 ,
GSM1619805 ,
GSM1619806 ,
GSM1619807 ,
GSM1619808 ,
GSM1619809 ,
GSM1619810 ,
GSM1619811 ,
GSM1619812 ,
GSM1712798 ,
GSM1712799 ,
GSM1712800 ,
GSM1712801 ,
GSM1712802 ,
GSM1712803 ,
GSM1712804 ,
GSM1712805 ,
GSM1712806 ,
GSM1712807 ,
GSM1712808 ,
GSM1712809 ,
GSM1820519 ,
GSM1820520 ,
GSM1820521 ,
GSM1820522 ,
GSM1820523 ,
GSM1820524 ,
GSM1820525 ,
GSM1820526 ,
GSM1826730 ,
GSM1826731 ,
GSM1826732 ,
GSM1826733 ,
GSM1826734 ,
GSM1826735 ,
GSM1826736 ,
GSM1826737 ,
GSM1826738 ,
GSM1826739 ,
GSM1826740 ,
GSM1826741 ,
GSM1832931 ,
GSM1832932 ,
GSM1832933 ,
GSM2398528 ,
GSM2398529 ,
GSM2398530 ,
GSM2398531 ,
GSM2486336 ,
GSM2486337 ,
GSM2486338 ,
GSM2486339 ,
GSM2486340 ,
GSM2486341 ,
GSM2486342 ,
GSM2486343 ,
GSM2633513 ,
GSM2633514 ,
GSM2633515 ,
GSM2633516 ,
GSM2633517 ,
GSM2633518 ,
GSM2633519 ,
GSM2633520 ,
GSM2633521 ,
GSM2633522 ,
GSM2633523 ,
GSM2633524 ,
GSM2753249 ,
GSM2753250 ,
GSM2753251 ,
GSM2753252 ,
GSM2753253 ,
GSM2753254 ,
GSM2753255 ,
GSM2753256 ,
GSM3264516 ,
GSM3264517 ,
GSM3264518 ,
GSM3264519 ,
GSM3264606 ,
GSM3264607 ,
GSM3264608 ,
GSM3264609 ,
GSM3433348 ,
GSM3433349 ,
GSM3433350 ,
GSM3735508 ,
GSM3735509 ,
GSM3735510 ,
GSM3735511 ,
GSM3735512 ,
GSM3735513 ,
GSM3735514 ,
GSM3735515 Series (25)
GSE36559 Investigating gene expression differences in two chicken lines with variable propensity to feather pecking
GSE37339 Chicken embryonic cerebral cortex exposed to two doses of PFHxS.
GSE46585 The use of Microarray Technology to screen for immune related genes regulated during infection with Avibacterium paragallinarum serovar C-3
GSE48674 The use of Microarray Technology to screen for tumor related genes regulated in myeloid leukosis of chicken, during infection with avian leucosis virus subgroup J.
GSE53129 Transcriptomic analysis of chic embryos forebrain lacking Notch signalling
GSE56165 Characterization of gene expression changes in IRF4-deficient DT40 B cells
GSE57213 Crucial genes and pathways in chicken germ stem cell differentiation
GSE59663 Expression profiles in different stages of the immune response to Salmonella enterica Pullorum in the chicken spleen
GSE61221 Transcriptome analysis of chicken ES, blastodermal, primordial germ cells, embryonic fibroblasts and monocytic cells
GSE61520 Mycoplasma gallisepticum Lipid Associated Membrane Proteins Up-regulate Inflammatory Genes in Chicken Tracheal Epithelial Cells via TLR-2 Ligation Through an NF-κB Dependent Pathway
GSE65852 Systematic Identification of Genes Involved in Feather Regeneration in Wanxi-White Goose
GSE66320 Transcriptional profiling of host gene expression in chicken embryo fibroblasts infected with Reticuloendotheliosis virus strain HA1101
GSE69918 Identification of differentially expressed genes and pathways for myofiber characteristics in soleus and extensor digitorum longus muscles between chicken breeds differing in meat quality
GSE70855 Development of gene expression signatures for chicken LMH cells infected with infectious laryngotracheitis virus (ILTV)
GSE71091 Acute heat stress induces differential gene expressions in the small yellow follicles of a broiler-type strain of Taiwan country chickens
GSE71352 The Jejunum Mucosa of Female Black-boned Chickens: Control vs. Heat-stressed Treatment
GSE90118 Expression analysis of chicken chorioretinal tissues in control and myopic eyes with or without violet light
GSE94836 BLIMP-1 is insufficient to induce antibody secretion in the absence of IRF4
GSE99108 Acute heat stress induces differential gene expressions in the small yellow follicles of a layer-type strain of Taiwan country chickens
GSE103067 In vitro study of role of Sigma B in pathogenesis of Avian Reovirus
GSE116932 Genetic analysis of residual feed intake and its molecular pathways in coloured broiler chicken [liver]
GSE116940 Genetic analysis of residual feed intake and its molecular pathways in coloured broiler chicken [duodenum]
GSE116945 Genetic analysis of residual feed intake and its molecular pathways in coloured broiler chicken
GSE121368 differentially expressed genes in NDV infected chicken brains
GSE130293 Microarray analysis of molecular pathways and candidate genes between dorsal and leg Skin in Chicken
Data table header descriptions ID Agilent feature number
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBank Accession number
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID Spot identifier
Data table ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE SPOT_ID GE_BrightCorner
pos
--GE_BrightCorner
DarkCorner
pos
--DarkCorner
A_87_P024536
FALSE
BX929904 420552
LOC420552
hypothetical gene supported by BX929555; BX929904
Gga.11246
ENSGALT00000038153
ens|ENSGALT00000038153|gb|BX929904|gb|BX929555|gb|XM_429771
chr2:22584170-22584229
Gallus gallus finished cDNA, clone ChEST655o24. [BX929904]
AGCAAAACTTAAATAGCACCTGATTCAGTACTTGCAGTCTTCTGATTAAAATATGCAGTC
A_87_P176698
FALSE
XM_001235222
XM_001235222 tc|TC334882|ref|XM_001235222
chr2:94675921-94675980
PREDICTED: Gallus gallus hypothetical protein LOC772021 (LOC772021), mRNA [XM_001235222]
CTTCCAAGAACAATAACTGTTGTTATTCTGCATCTTTTTGAAGGCTGTTACAAAGAGCAG
A_87_P133003
FALSE
AM773267 Gga.47240
gb|AM773267|tc|NP12999179
unmapped
Gallus gallus partial mRNA for immunoglobulin heavy chain variable region (IGVH gene), clone Ro52_R2E5. [AM773267]
AGTGCTTATGGTGATCCTGGCTGTTATTTTTGTGTTGATGATATCGACACATGGGGCCAC
A_87_P011913
FALSE
CR523001 420374
ZNF777
zinc finger protein 777
Gga.13273
ENSGALT00000007889
ens|ENSGALT00000007889|gb|CR523001|gb|CR352782|gb|AJ720969
chr2:470585-470644
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5ZI15] [ENSGALT00000007889]
ACGGCGCATCAGGGTCCACCTGGACTATGAGGCTGGGCAAGTAACCTTCTACAACACTGA
A_87_P035596
FALSE
NM_204542
NM_204542 395221
NR1H3
nuclear receptor subfamily 1, group H, member 3
Gga.4130
ENSGALT00000013356
ref|NM_204542|ens|ENSGALT00000013356|gb|AJ851708|tc|TC303923
chr5:25261828-25261769
Gallus gallus nuclear receptor subfamily 1, group H, member 3 (NR1H3), mRNA [NM_204542]
GO:0000790(nuclear chromatin)|GO:0003700(sequence-specific DNA binding transcription factor activity)|GO:0003707(steroid hormone receptor activity)|GO:0005634(nucleus)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008270(zinc ion binding)|GO:0010552(positive regulation of gene-specific transcription from RNA polymerase II promoter)|GO:0010867(positive regulation of triglyceride biosynthetic process)|GO:0010870(positive regulation of receptor biosynthetic process)|GO:0010875(positive regulation of cholesterol efflux)|GO:0010887(negative regulation of cholesterol storage)|GO:0030528(transcription regulator activity)|GO:0032270(positive regulation of cellular protein metabolic process)|GO:0032369(negative regulation of lipid transport)|GO:0032570(response to progesterone stimulus)|GO:0032810(sterol response element binding)|GO:0034145(positive regulation of toll-like receptor 4 signaling pathway)|GO:0035326(enhancer binding)|GO:0042632(cholesterol homeostasis)|GO:0043277(apoptotic cell clearance)|GO:0043565(sequence-specific DNA binding)|GO:0044255(cellular lipid metabolic process)|GO:0045723(positive regulation of fatty acid biosynthetic process)|GO:0045861(negative regulation of proteolysis)|GO:0046872(metal ion binding)|GO:0048550(negative regulation of pinocytosis)|GO:0051006(positive regulation of lipoprotein lipase activity)|GO:0070328(triglyceride homeostasis)|GO:0071222(cellular response to lipopolysaccharide)|GO:0090188(negative regulation of pancreatic juice secretion)
CCTTGCCACTGGCCTTCACTCTGCACCTTTGTAAAGCACTTGTAACAATCCGTAAAATAA
A_87_P024313
FALSE
NM_001044641
NM_001044641 419352
PARD6B
par-6 partitioning defective 6 homolog beta (C. elegans)
Gga.12576
ENSGALT00000012978
ref|NM_001044641|ens|ENSGALT00000012978|gb|BX930407|gb|BX932654
chr20:13529086-13529027
Gallus gallus par-6 partitioning defective 6 homolog beta (C. elegans) (PARD6B), mRNA [NM_001044641]
GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0005886(plasma membrane)|GO:0005923(tight junction)|GO:0005938(cell cortex)|GO:0006461(protein complex assembly)|GO:0045177(apical part of cell)
CTGCTGCCCATAAATAATGATGACAATTATCATAAAGCAGTTTCCACTGCCAATCCCCTA
A_87_P002891
FALSE
XM_418263 420147
EPS15L1
epidermal growth factor receptor pathway substrate 15-like 1
Gga.18726
ENSGALT00000006230
ens|ENSGALT00000006230|tc|TC348353
chr28:3915705-3915764
Rep: Epidermal growth factor receptor substrate 15-like 1 (Eps15-related protein) (Eps15R). - Gallus gallus, partial (35%) [TC348353]
GO:0005509(calcium ion binding)
GATCCCTTTGGAAGTGGCGCTTTCAGTAGTAGTGAAGGATTTGCAGATTTCAGTCAGATG
A_87_P095711
FALSE
CR353222 422667
BBS12
Bardet-Biedl syndrome 12
Gga.17040
ENSGALT00000019318
ens|ENSGALT00000019318|gb|CR353222|gb|XM_420621|tc|TC308914
chr4:55167021-55166962
Gallus gallus finished cDNA, clone ChEST45a6. [CR353222]
ATAGGTCCCAGAAGGAGTCAGCTATTAAACTCACGTTCATCGAGTGAATTTATGTTTTTG
A_87_P023818
FALSE
BX931696 Gga.18572
ENSGALT00000040398
ens|ENSGALT00000040398|ens|ENSGALT00000001967|gb|BX931696|ens|ENSGALT00000040395
chr21:1848651-1849441
chromosome 1 open reading frame 222 [Source:HGNC Symbol;Acc:27917] [ENSGALT00000040398]
CTCAGTGACATCGCCAAAGAAAAGGAACTTGTGGTCCAGAAAATCAGAGATGAGCTGACT
A_87_P123208
FALSE
CR388728 Gga.17466
ENSGALT00000021367
ens|ENSGALT00000021367|gb|CR388728
chr28:2734556-2734612
Gallus gallus finished cDNA, clone ChEST889l23. [CR388728]
AGCAAAAGGAGGTGAAAAGGAAAAACAGCAAGAAGTGTATTAAAGGTGTTGAAAGCCCCT
A_87_P166308
FALSE
XM_422096 424248
SEMA5B
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
Gga.31259
gb|XM_422096|tc|TC308907|tc|TC337166
chr7:28129906-28129847
PREDICTED: Gallus gallus similar to MGC68835 protein (LOC424248), mRNA [XM_422096]
GO:0004872(receptor activity)|GO:0007275(multicellular organismal development)|GO:0016020(membrane)
TGAAATCAACAGAGAGCAGGAACGAAGTCCACATCTGATGCAGATAATTTGATGCCTCCA
A_87_P018264
FALSE
CR352949 Gga.22193
gb|CR352949|tc|TC342170|tc|TC369976
chr26:4793332-4793273
Gallus gallus finished cDNA, clone ChEST404l9. [CR352949]
CTGTGAAAACAGGAGTAAAACGCTACTGTGCTTTCCTGGACAAGGATCAAAGCTGGAGTT
A_87_P023564
FALSE
BX932277 Gga.11999
gb|BX932277|gb|XM_422624|tc|TC309323
chr9:9296569-9296510
Gallus gallus finished cDNA, clone ChEST353k10. [BX932277]
TCCCACTACACAACTTCTGGTAGACTACTTACCATTGAACAGTCTGCATATCTTTCTCAG
A_87_P035785
FALSE
NM_001031183
NM_001031183 423116
PPP6R3
protein phosphatase 6, regulatory subunit 3
Gga.7672
ENSGALT00000011390
ref|NM_001031183|ens|ENSGALT00000011390|ens|ENSGALT00000032683|gb|AJ851429
chr5:17747976-17748847
Gallus gallus protein phosphatase 6, regulatory subunit 3 (PPP6R3), mRNA [NM_001031183]
GO:0005488(binding)
TTCCTCTTAAATGAATCTCCTCTAAACCCTTTACTCGCCAGTTTCTTCAGCAAGGGGCTA
A_87_P064436
FALSE
XM_417783 Gga.13869
ENSGALT00000003937
ens|ENSGALT00000003937|ens|ENSGALT00000003942|tc|TC370234
chr23:4669524-4669465
TTCAAGTTGAACTAACCTGTTTGAGTGGTGCATAAATCCTTTATCTGTGTAGGGTTTAAA
A_87_P151573
FALSE
XM_419185 421102
ASXL3
additional sex combs like 3 (Drosophila)
Gga.11353
gb|XM_419185|tc|TC308276
chr2:110183491-110183550
PREDICTED: Gallus gallus similar to KIAA1713 protein (LOC421102), mRNA [XM_419185]
AATTTGCTGACAGTAGCAATGCCGATGAACTGGAACTGAAATGCTCTTGCAGGCTGAAAG
A_87_P143088
FALSE
NM_001012944
NM_001012944 427137
SKIV2L2
superkiller viralicidic activity 2-like 2 (S. cerevisiae)
Gga.9708
ENSGALT00000023719
ref|NM_001012944|gb|AJ719333|ens|ENSGALT00000023719|tc|TC362783
chrZ:16145257-16145316
Gallus gallus superkiller viralicidic activity 2-like 2 (S. cerevisiae) (SKIV2L2), mRNA [NM_001012944]
GO:0003676(nucleic acid binding)|GO:0004386(helicase activity)|GO:0005524(ATP binding)|GO:0008026(ATP-dependent helicase activity)|GO:0016818(hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides)
CGACAAATGTGTCAGGCAGCAAAAGCAATTGGAAACACAGAGCTGGAAAATAAGTTTGCA
A_87_P097991
FALSE
XM_419463 421408
SRBD1
S1 RNA binding domain 1
Gga.24774
ENSGALT00000016234
ens|ENSGALT00000016234|gb|XM_419463|tc|TC332630|tc|TC317895
chr3:27283001-27282942
PREDICTED: Gallus gallus similar to S1 RNA binding domain 1 (LOC421408), mRNA [XM_419463]
GGAAGTTAAAGTGCTTAATGTCGATATTCCTCGATTAAGGATAACATTGGATCTTATTCG
43663 16128 Kbytes .Supplementary data files not provided
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