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| Status |
Public on Apr 01, 2012 |
| Title |
Human_HG18_Deluxe_Promoter_HX1_HD2.2 tiling array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
See NimbleGen website.
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| Description |
Oligo coordinates based on genome build HG18.
The array tiles RefSeq genes from -7000 to +3000 relative to the TSS, with 100bp probe spacing.
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| Contributor(s) |
Sun M, Isaacs GD, Hah N, Heldring N, Fogarty EA, Kraus WL |
| Submission date |
Jun 21, 2011 |
| Last update date |
Apr 01, 2012 |
| Contact name |
W. Lee Kraus |
| E-mail(s) |
lee.kraus@utsouthwestern.edu
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| Organization name |
UT Southwestern Medical Center
|
| Street address |
5323 Harry Hines Blvd.
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| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390-8511 |
| Country |
USA |
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| Samples (2) |
GSM745989, GSM745994 |
| Series (1) |
| GSE13200 |
Estrogen Regulates the JNK1 Genomic Localization Program in Breast Cancer Cells to Control Gene Expression and Cell Growth |
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| Data table header descriptions |
| ID |
probe ID |
| Chromosome |
chromosome no. |
| RANGE_GB |
RefSeq accession.version of chromosome (hg18) |
| SPOT_ID |
|
| SEQ_ID |
SEQ_ID |
| RANGE_START |
start coordinate relative to RANGE_GB |
| LENGTH |
oligo length |
| RANGE_END |
end coordinate relative to RANGE_GB |
| Data table |
| ID |
Chromosome |
RANGE_GB |
SPOT_ID |
SEQ_ID |
RANGE_START |
LENGTH |
RANGE_END |
| CHR01FS000004459 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
4459 |
50 |
4508 |
| CHR01FS000004599 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
4599 |
50 |
4648 |
| CHR01FS000004689 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
4689 |
50 |
4738 |
| CHR01FS000004761 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
4761 |
50 |
4810 |
| CHR01FS000004841 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
4841 |
50 |
4890 |
| CHR01FS000005021 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
5021 |
50 |
5070 |
| CHR01FS000005056 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
5056 |
50 |
5105 |
| CHR01FS000005181 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
5181 |
50 |
5230 |
| CHR01FS000005256 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
5256 |
50 |
5305 |
| CHR01FS000005391 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
5391 |
50 |
5440 |
| CHR01FS000005441 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
5441 |
50 |
5490 |
| CHR01FS000005626 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
5626 |
50 |
5675 |
| CHR01FS000005671 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
5671 |
50 |
5720 |
| CHR01FS000005751 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
5751 |
50 |
5800 |
| CHR01FS000005921 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
5921 |
50 |
5970 |
| CHR01FS000005981 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
5981 |
50 |
6030 |
| CHR01FS000006071 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
6071 |
50 |
6120 |
| CHR01FS000006156 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
6156 |
58 |
6205 |
| CHR01FS000006271 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
6271 |
50 |
6320 |
| CHR01FS000006376 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
6376 |
50 |
6425 |
Total number of rows: 2125410
Table truncated, full table size 168391 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL13756_HG18_Deluxe_Promoter_HX1_HD2.2.ndf.gz |
139.5 Mb |
(ftp)(http) |
NDF |
| GPL13756_HG18_Deluxe_Promoter_HX1_HD2.2.pos.gz |
17.8 Mb |
(ftp)(http) |
POS |
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