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| Status |
Public on Feb 15, 2012 |
| Title |
Human_HG18_Deluxe_Promoter_HX1_HD2.1 tiling array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Nimblegen |
| Manufacture protocol |
See Nimblegen website
|
| |
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| Description |
Oligo coordinates based on genome build HG18.
The array tiles RefSeq genes from -7000 to +3000 relative to the TSS, with 100bp probe spacing.
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| |
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| Contributor(s) |
Sun M, Isaacs GD, Hah N, Heldring N, Fogarty EA, Kraus WL |
| Submission date |
Jun 20, 2011 |
| Last update date |
Feb 15, 2012 |
| Contact name |
W. Lee Kraus |
| E-mail(s) |
lee.kraus@utsouthwestern.edu
|
| Organization name |
UT Southwestern Medical Center
|
| Street address |
5323 Harry Hines Blvd.
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390-8511 |
| Country |
USA |
| |
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| Samples (7)
|
GSM745965, GSM745966, GSM866767, GSM866768, GSM866769, GSM866770
|
| Series (2) |
| GSE13200 |
Estrogen Regulates the JNK1 Genomic Localization Program in Breast Cancer Cells to Control Gene Expression and Cell Growth |
| GSE35358 |
Examination of functional interplay between NMNAT-1 (a nuclear NAD+ synthase) and PARP-1 (a nuclear poly(ADP-ribose) polymerase) |
|
| Data table header descriptions |
| ID |
probe ID |
| Chromosome |
chromosome no. |
| RANGE_GB |
RefSeq accession.version of chromosome (hg18) |
| SPOT_ID |
|
| SEQ_ID |
SEQ_ID |
| RANGE_START |
start coordinate relative to RANGE_GB |
| LENGTH |
oligo length |
| RANGE_END |
end coordinate relative to RANGE_GB |
| Data table |
| ID |
Chromosome |
RANGE_GB |
SPOT_ID |
SEQ_ID |
RANGE_START |
LENGTH |
RANGE_END |
| CHR01FS000000495 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
495 |
50 |
544 |
| CHR01FS000000585 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
585 |
50 |
634 |
| CHR01FS000000670 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
670 |
50 |
719 |
| CHR01FS000000740 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
740 |
50 |
789 |
| CHR01FS000000925 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
925 |
50 |
974 |
| CHR01FS000000960 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
960 |
50 |
1009 |
| CHR01FS000001095 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
1095 |
50 |
1144 |
| CHR01FS000001220 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
1220 |
50 |
1269 |
| CHR01FS000001305 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
1305 |
50 |
1354 |
| CHR01FS000001340 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
1340 |
50 |
1389 |
| CHR01FS000001439 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
1439 |
50 |
1488 |
| CHR01FS000001604 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
1604 |
50 |
1653 |
| CHR01FS000001669 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
1669 |
50 |
1718 |
| CHR01FS000001819 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
1819 |
50 |
1868 |
| CHR01FS000001844 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
1844 |
50 |
1893 |
| CHR01FS000001939 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
1939 |
50 |
1988 |
| CHR01FS000002064 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
2064 |
50 |
2113 |
| CHR01FS000002159 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
2159 |
50 |
2208 |
| CHR01FS000002299 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
2299 |
50 |
2348 |
| CHR01FS000002389 |
chr1 |
NC_000001.9 |
|
chr1:438-28944 |
2389 |
50 |
2438 |
Total number of rows: 2113890
Table truncated, full table size 167471 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL13752_HG18_Deluxe_Promoter_HX1_HD2.1.ndf.gz |
138.9 Mb |
(ftp)(http) |
NDF |
| GPL13752_HG18_Deluxe_Promoter_HX1_HD2.1.pos.gz |
17.4 Mb |
(ftp)(http) |
POS |
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