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Status
Public on Aug 22, 2011
Title
Affymetrix IST_IBB Burkholderia 15K v1.0 (GeneChip BCC1sa520656F)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organisms
Burkholderia cenocepacia J2315 ; Burkholderia multivorans ATCC 17616 Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Submission date
Mar 31, 2011
Last update date
May 23, 2012
Contact name
Leonilde Morais Moreira
E-mail(s)
lmoreira@ist.utl.pt Phone
+351 218419031
Organization name
Instituto Superior Tecnico
Department
Bioengineering
Lab
Biological Sciences
Street address
A. Rovisco Pais
City
Lisboa
ZIP/Postal code
1049-001
Country
Portugal
Samples (46)
GSM700335 , GSM700336 , GSM700337 , GSM700338 , GSM700339 , GSM700340
GSM754336 ,
GSM754337 ,
GSM754338 ,
GSM754339 ,
GSM1147611 ,
GSM1147612 ,
GSM1147613 ,
GSM1147614 ,
GSM1147615 ,
GSM1147616 ,
GSM1147617 ,
GSM1147618 ,
GSM1147619 ,
GSM2549730 ,
GSM2549731 ,
GSM2549732 ,
GSM2549733 ,
GSM2549734 ,
GSM2549735 ,
GSM2549736 ,
GSM2549737 ,
GSM2549738 ,
GSM3031711 ,
GSM3031712 ,
GSM3031713 ,
GSM3031714 ,
GSM3031715 ,
GSM3031716 ,
GSM3031717 ,
GSM3031718 ,
GSM3031719 ,
GSM3031720 ,
GSM3031721 ,
GSM3031722 ,
GSM4957309 ,
GSM4957310 ,
GSM4957311 ,
GSM4957312 ,
GSM4957313 ,
GSM4957314 Series (7)
GSE28306 Expression data from Burkholderia multivorans cystic fibrosis clinical isolates
GSE30402 Hybridization of Burkholderia multivorans D2095 and D2214 genomic DNA
GSE30568 Burkholderia cepacia complex and cystic fibrosis (CF) patients
GSE47344 Expression data from Burkholderia cenocepacia J2315 hfq and hfq2 mutants
GSE97006 Expression data from Burkholderia multivorans ATCC 17616 wild-type and Bmul_2557 (ldhR) gene deletion mutant
GSE111467 Expression data from Burkholderia multivorans mucoid and nonmucoid isolates
GSE162693 Overexpression of a histone-like nucleoid structuring protein in Burkholderia multivorans affects several traits dependent on the cell envelope
Relations Alternative to
GPL15600 (Alternative CDF)
Data table header descriptions ID ORGANISM_1 ORF_LIST_1 ORGANISM_2 ORF_LIST_2 GENE_NAME ORF_LIST ORF Names AND
DESCRIPTION SPOT_ID
Data table ID ORGANISM_1 ORF_LIST_1 ORGANISM_2 ORF_LIST_2 GENE_NAME ORF_LIST DESCRIPTION SPOT_ID aceE_at
Burkholderia cenocepacia J2315
BCAS0711
-
BCAS0711 2-oxo-acid dehydrogenase E1 subunit
acpP_at
Burkholderia cenocepacia J2315
BCAL0845
acpP
BCAL0845 acyl carrier protein
AFFX-BioB-3_at
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
CONTROL
AFFX-BioB-5_at
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
CONTROL
AFFX-BioB-M_at
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
CONTROL
AFFX-BioC-3_at
E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
CONTROL
AFFX-BioC-5_at
E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
CONTROL
AFFX-BioDn-3_at
E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
CONTROL
AFFX-BioDn-5_at
E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
CONTROL
AFFX-CreX-3_at
Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein.
CONTROL
AFFX-CreX-5_at
Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein.
CONTROL
AFFX-DapX-3_at
B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's.
CONTROL
AFFX-DapX-5_at
B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's.
CONTROL
AFFX-DapX-M_at
B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's.
CONTROL
AFFX-LysX-3_at
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
CONTROL
AFFX-LysX-5_at
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
CONTROL
AFFX-LysX-M_at
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
CONTROL
AFFX-PheX-3_at
B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2885-3326 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds.
CONTROL
AFFX-PheX-5_at
B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2028-2375 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds.
CONTROL
AFFX-PheX-M_at
B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2437-2828 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds.
CONTROL
14869 1692 Kbytes .Supplementary data files not provided
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