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    GPSM2 G protein signaling modulator 2 [ Sus scrofa (pig) ]

    Gene ID: 100518248, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GPSM2provided by VGNC
    Official Full Name
    G protein signaling modulator 2provided by VGNC
    Primary source
    VGNC:VGNC:88649
    See related
    Ensembl:ENSSSCG00000021440
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 3.8), lung (RPKM 3.7) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See GPSM2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (111100912..111165902, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (121594274..121661651, complement)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 13 Neighboring gene WD repeat domain 47 Neighboring gene chloride channel CLIC like 1 Neighboring gene AKNA domain containing 1 Neighboring gene syntaxin binding protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-protein-signaling modulator 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      111100912..111165902 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021090096.1 → XP_020945755.1  G-protein-signaling modulator 2 isoform X1

      UniProtKB/TrEMBL
      A0A480UHZ0, A0A4X1TE08, A0A8D0LEM7, I3LB55
      Related
      ENSSSCP00000021274.2, ENSSSCT00000023502.3
      Conserved Domains (4) summary
      smart00390
      Location:594 → 616
      GoLoco; LGN motif, putative GEFs specific for G-alpha GTPases
      sd00006
      Location:243 → 270
      TPR; TPR repeat [structural motif]
      pfam02188
      Location:489 → 510
      GoLoco; GoLoco motif
      pfam13424
      Location:243 → 314
      TPR_12; Tetratricopeptide repeat

    2. XM_021090097.1 → XP_020945756.1  G-protein-signaling modulator 2 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TI86, A0A8D0I6V6, A0A8D1L3V9
      Conserved Domains (4) summary
      smart00390
      Location:575 → 597
      GoLoco; LGN motif, putative GEFs specific for G-alpha GTPases
      sd00006
      Location:224 → 251
      TPR; TPR repeat [structural motif]
      pfam02188
      Location:470 → 491
      GoLoco; GoLoco motif
      pfam13424
      Location:224 → 295
      TPR_12; Tetratricopeptide repeat

    3. XM_021090099.1 → XP_020945758.1  G-protein-signaling modulator 2 isoform X4

      UniProtKB/TrEMBL
      A0A8D1L3V9
      Conserved Domains (4) summary
      smart00390
      Location:516 → 538
      GoLoco; LGN motif, putative GEFs specific for G-alpha GTPases
      sd00006
      Location:224 → 251
      TPR; TPR repeat [structural motif]
      pfam02188
      Location:411 → 432
      GoLoco; GoLoco motif
      pfam13424
      Location:224 → 295
      TPR_12; Tetratricopeptide repeat

    4. XM_021090098.1 → XP_020945757.1  G-protein-signaling modulator 2 isoform X3

      UniProtKB/TrEMBL
      A0A480UHZ0
      Conserved Domains (4) summary
      smart00390
      Location:535 → 557
      GoLoco; LGN motif, putative GEFs specific for G-alpha GTPases
      sd00006
      Location:243 → 270
      TPR; TPR repeat [structural motif]
      pfam02188
      Location:430 → 451
      GoLoco; GoLoco motif
      pfam13424
      Location:243 → 314
      TPR_12; Tetratricopeptide repeat

    RNA

    1. XR_002343535.1 RNA Sequence

      Related
      ENSSSCT00000091839.1
    Nucleotide Protein
    Heading Accession and Version

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