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Conserved domains on  [gi|1191875195|ref|XP_020945758|]
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G-protein-signaling modulator 2 isoform X4 [Sus scrofa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-316 2.68e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 84.67  E-value: 2.68e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  46 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdrlGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELndkvgeARA 125
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 126 LYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205
Cdd:COG0457    79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 206 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKtlLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDY 285
Cdd:COG0457   133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1191875195 286 HLKHLAIAQELNDRIGEGRACWSLGNAYTAL 316
Cdd:COG0457   205 QALRKKLAILTLAALAELLLLALALLLALRL 235
GoLoco pfam02188
GoLoco motif;
411-432 4.59e-07

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 46.26  E-value: 4.59e-07
                          10        20
                  ....*....|....*....|..
gi 1191875195 411 EGFFDLLSRFQSNRMDDQRCCL 432
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 516-538 2.39e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


:

Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.03  E-value: 2.39e-06
                           10        20
                   ....*....|....*....|...
gi 1191875195  516 DEDFFDILVKCQGSRLDDQRCAP 538
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
551-572 1.68e-05

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 41.64  E-value: 1.68e-05
                          10        20
                  ....*....|....*....|..
gi 1191875195 551 DDFFSLILRSQAKRMDEQRVLL 572
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
466-487 1.70e-05

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 41.64  E-value: 1.70e-05
                          10        20
                  ....*....|....*....|..
gi 1191875195 466 DEFLDLLASSQSRRLDDQRASF 487
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
TPR_7 pfam13176
Tetratricopeptide repeat;
305-340 3.82e-03

Tetratricopeptide repeat;


:

Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 3.82e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1191875195 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 340
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-316 2.68e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 84.67  E-value: 2.68e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  46 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdrlGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELndkvgeARA 125
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 126 LYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205
Cdd:COG0457    79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 206 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKtlLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDY 285
Cdd:COG0457   133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1191875195 286 HLKHLAIAQELNDRIGEGRACWSLGNAYTAL 316
Cdd:COG0457   205 QALRKKLAILTLAALAELLLLALALLLALRL 235
TPR_12 pfam13424
Tetratricopeptide repeat;
224-295 2.44e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 2.44e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191875195 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQE 295
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
GoLoco pfam02188
GoLoco motif;
411-432 4.59e-07

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 46.26  E-value: 4.59e-07
                          10        20
                  ....*....|....*....|..
gi 1191875195 411 EGFFDLLSRFQSNRMDDQRCCL 432
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 410-432 6.97e-07

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 45.57  E-value: 6.97e-07
                           10        20
                   ....*....|....*....|...
gi 1191875195  410 DEGFFDLLSRFQSNRMDDQRCCL 432
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 516-538 2.39e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.03  E-value: 2.39e-06
                           10        20
                   ....*....|....*....|...
gi 1191875195  516 DEDFFDILVKCQGSRLDDQRCAP 538
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
517-536 4.89e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.18  E-value: 4.89e-06
                          10        20
                  ....*....|....*....|
gi 1191875195 517 EDFFDILVKCQGSRLDDQRC 536
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRC 20
GoLoco pfam02188
GoLoco motif;
551-572 1.68e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 41.64  E-value: 1.68e-05
                          10        20
                  ....*....|....*....|..
gi 1191875195 551 DDFFSLILRSQAKRMDEQRVLL 572
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
466-487 1.70e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 41.64  E-value: 1.70e-05
                          10        20
                  ....*....|....*....|..
gi 1191875195 466 DEFLDLLASSQSRRLDDQRASF 487
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 550-572 6.36e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.18  E-value: 6.36e-05
                           10        20
                   ....*....|....*....|...
gi 1191875195  550 DDDFFSLILRSQAKRMDEQRVLL 572
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 465-487 7.89e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 39.79  E-value: 7.89e-05
                           10        20
                   ....*....|....*....|...
gi 1191875195  465 TDEFLDLLASSQSRRLDDQRASF 487
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 69-357 4.53e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 43.37  E-value: 4.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  69 DLTLARTIGDRLGEA-------------KASGNLGNTLKVLGNFDEAvvccqrhldisRELNDKV-GEARALYNLGNVYH 134
Cdd:NF040586  407 DYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEA-----------RELDEDTlERQRRVLGLGEDHP 475

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 135 ----AKGkSFGcpgpQD---VGDFPEevrnalqaAVDYYEENLSLVTALGDRAAQG--RAFGNLGNTHYLLGNFRDAVIA 205
Cdd:NF040586  476 htlmTAG-GLG----ADlraLGRFRE--------ALELDEETLERHRRVFGEDHPRtlRAANNLAVSLRLLGDYREALEL 542

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 206 HEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEF-------ETASEYYKKTLLLA------RQLKDRAVeaqACYSLG 270
Cdd:NF040586  543 DREVLRRRRRvLGpDHPRTLLSANNLARDLRELGRYaealdllEEALERYREVLGGPdhpdtlRAAKSLAV---ALRRAG 619

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 271 nthtllqDYEKAidyhlkhLAIAQE----LNDRIGEG----RAC-WSLGNAYTALGNHDQAMHFAEKHLEISREVGdksG 341
Cdd:NF040586  620 -------RLEEA-------LELAEDtyerYRRRFGPDhpdtLAAaLSLANDLRALGDADEARELAREVLDRYRRVL---G 682

                         330       340
                  ....*....|....*....|.
gi 1191875195 342 E-----LTARLNLSDLQMVLG 357
Cdd:NF040586  683 EdhpftLACRNNLAVLLRALG 703
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 263-295 5.91e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 5.91e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1191875195  263 AQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQE 295
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
305-340 3.82e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 3.82e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1191875195 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 340
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-316 2.68e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 84.67  E-value: 2.68e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  46 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdrlGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELndkvgeARA 125
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 126 LYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205
Cdd:COG0457    79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 206 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKtlLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDY 285
Cdd:COG0457   133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1191875195 286 HLKHLAIAQELNDRIGEGRACWSLGNAYTAL 316
Cdd:COG0457   205 QALRKKLAILTLAALAELLLLALALLLALRL 235
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
82-349 2.35e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.98  E-value: 2.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  82 EAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQA 161
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGR--------------------YEE 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 162 AVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFET 241
Cdd:COG0457    61 ALADYEQ------ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDE 128

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 242 ASEYYKKTLLLARQLkdraveAQACYSLGNTHTLLQDYEKAIDYHLKhlAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 321
Cdd:COG0457   129 AIEAYERALELDPDD------ADALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALL 200

                         250       260
                  ....*....|....*....|....*...
gi 1191875195 322 AMHFAEKHLEISREVGDKSGELTARLNL 349
Cdd:COG0457   201 LALEQALRKKLAILTLAALAELLLLALA 228
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 48-332 7.76e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.99  E-value: 7.76e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  48 QLGNAYFYLHDYAKALEYhhhdltLARTIGDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRElndkvgEARALY 127
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDL------LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 128 NLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207
Cdd:COG2956    81 ELAQDYLKAGL--------------------LDRAEELLEK------LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 208 QrllIAKEFGDKAaerRAYSNLGNAYIFLGEFETASEYYKKtlllARQLKDRAVEAQacYSLGNTHTLLQDYEKAIdyhl 287
Cdd:COG2956   135 R---LLKLGPENA---HAYCELAELYLEQGDYDEAIEALEK----ALKLDPDCARAL--LLLAELYLEQGDYEEAI---- 198

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1191875195 288 KHLAIAQELNDRIGEGRAcwSLGNAYTALGNHDQAMHFAEKHLEI 332
Cdd:COG2956   199 AALERALEQDPDYLPALP--RLAELYEKLGDPEEALELLRKALEL 241
COG3899 COG3899
Predicted ATPase [General function prediction only];
156-310 9.15e-12

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 68.35  E-value: 9.15e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  156 RNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF-------RDAVIAHEQRLLIAKEFGDKAAERRAYSN 228
Cdd:COG3899    718 RGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFeeaeallERALAARALAALAALRHGNPPASARAYAN 797

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  229 LGnaYIFLGEFETASEYYKKTLLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS 308
Cdd:COG3899    798 LG--LLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAA 875


                   ..
gi 1191875195  309 LG 310
Cdd:COG3899    876 AA 877
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 37-255 2.34e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 2.34e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  37 EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdrlgEAKASGNLGNTLKVLGNFDEAVVCCQRHLDIsrel 116
Cdd:COG3914    72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALAL---- 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 117 ndKVGEARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLL 196
Cdd:COG3914   142 --NPDFAEAYLNLGEALRRLGR--------------------LEEAIAALRR------ALELDPDNAEALNNLGNALQDL 193

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1191875195 197 GNFRDAVIAHEQRLLIAKEFgdkaaeRRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255
Cdd:COG3914   194 GRLEEAIAAYRRALELDPDN------ADAHSNLLFALRQACDWEVYDRFEELLAALARG 246
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 159-357 3.03e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.28  E-value: 3.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 159 LQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEfgdkaaERRAYSNLGNAYIFLGE 238
Cdd:COG2956    24 PDKAIDLLEE------ALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 239 FETASEYYKKtlllARQLKDRAVEAQacYSLGNTHTLLQDYEKAIDYHLKHLAIAQElndrigEGRACWSLGNAYTALGN 318
Cdd:COG2956    92 LDRAEELLEK----LLELDPDDAEAL--RLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGD 159

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1191875195 319 HDQAMHFAEKHLEISREvgdksgELTARLNLSDLQMVLG 357
Cdd:COG2956   160 YDEAIEALEKALKLDPD------CARALLLLAELYLEQG 192
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 10-331 5.06e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 5.06e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTlsaiYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdrlgEAKASGNL 89
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEA----HLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLEL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  90 GNTLKVLGNFDEAVVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEn 169
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGD--------------------WEKAIEVLER- 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 170 lslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFgdkaaeRRAYSNLGNAYIFLGEFETASEYYKKT 249
Cdd:COG2956   136 -----LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAALERA 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 250 LLLARQLkdraveAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDRIgegracwSLGNAYTALGNHDQAMHFAEKH 329
Cdd:COG2956   205 LEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-------ALADLLERKEGLEAALALLERQ 271


                  ..
gi 1191875195 330 LE 331
Cdd:COG2956   272 LR 273
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 156-332 7.38e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.93  E-value: 7.38e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 156 RNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIF 235
Cdd:COG3914    51 LAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLA 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 236 LGEFETASEYYKKTLLLARQLkdraveAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDrigegrACWSLGNAYTA 315
Cdd:COG3914   125 LGRLEEALAALRRALALNPDF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------ALNNLGNALQD 192

                         170
                  ....*....|....*..
gi 1191875195 316 LGNHDQAMHFAEKHLEI 332
Cdd:COG3914   193 LGRLEEAIAAYRRALEL 209
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 152-357 1.24e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.08  E-value: 1.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 152 PEEVRNALQAAVDYYEENLSlvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231
Cdd:COG3914    10 AALAAAALLAAAAAAELALA---AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 232 AYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELndrigeGRACWSLGN 311
Cdd:COG3914    87 LLQALGRYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGE 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1191875195 312 AYTALGNHDQAMHFAEKHLEIsrevgdKSGELTARLNLSDLQMVLG 357
Cdd:COG3914   155 ALRRLGRLEEAIAALRRALEL------DPDNAEALNNLGNALQDLG 194
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 180-333 1.76e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.66  E-value: 1.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKTLLLARQlkdr 259
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPE------AFALLGEILLQLGDLDEAIVLLHEALELDPD---- 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191875195 260 avEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQElndrigEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
Cdd:COG4783    71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELD 136
TPR_12 pfam13424
Tetratricopeptide repeat;
224-295 2.44e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 2.44e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191875195 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQE 295
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 151-293 4.39e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 4.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 151 FPEEVRNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLG 230
Cdd:COG3914    80 LLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNLG 153

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1191875195 231 NAYIFLGEFETASEYYKKTLLLARQLkdraveAQACYSLGNTHTLLQDYEKAIDYHLKHLAIA 293
Cdd:COG3914   154 EALRRLGRLEEAIAALRRALELDPDN------AEALNNLGNALQDLGRLEEAIAAYRRALELD 210
TPR_12 pfam13424
Tetratricopeptide repeat;
267-335 1.73e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 48.92  E-value: 1.73e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1191875195 267 YSLGNTHTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335
Cdd:pfam13424   7 NNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG3899 COG3899
Predicted ATPase [General function prediction only];
94-337 2.86e-07

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 53.71  E-value: 2.86e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195   94 KVLGNFDEAVVCCQRHLDISRELNDKVGEARALYNLGNVYHAkgksfgcpgpqdVGDFpEEVRNALQAAVDYYEENLSLV 173
Cdd:COG3899    716 LARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYL------------AGRF-EEAEALLERALAARALAALAA 782

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  174 TALGDRAAQGRAFGNLGntHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253
Cdd:COG3899    783 LRHGNPPASARAYANLG--LLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAG 860

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  254 RQLKDRAVEAQACYSLGnTHTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
Cdd:COG3899    861 LETGDAALALLALAAAA-AAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAA 939


                   ....
gi 1191875195  334 REVG 337
Cdd:COG3899    940 AAAA 943
GoLoco pfam02188
GoLoco motif;
411-432 4.59e-07

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 46.26  E-value: 4.59e-07
                          10        20
                  ....*....|....*....|..
gi 1191875195 411 EGFFDLLSRFQSNRMDDQRCCL 432
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 44-286 5.05e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 5.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  44 AIYSQLGNAYFYLHDYAKALEYhhhdltLARTIGDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRElndkvgEA 123
Cdd:COG2956    77 EALLELAQDYLKAGLLDRAEEL------LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NA 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 124 RALYNLGNVYHAKGKsfgcpgpqdvgdfPEEVRNALQAAVDYYEENLslvtalgdraaqgRAFGNLGNTHYLLGNFRDAV 203
Cdd:COG2956   145 HAYCELAELYLEQGD-------------YDEAIEALEKALKLDPDCA-------------RALLLLAELYLEQGDYEEAI 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 204 IAHEQRLLIAKEFGdkaaerRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAI 283
Cdd:COG2956   199 AALERALEQDPDYL------PALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272


                  ...
gi 1191875195 284 DYH 286
Cdd:COG2956   273 RRH 275
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 410-432 6.97e-07

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 45.57  E-value: 6.97e-07
                           10        20
                   ....*....|....*....|...
gi 1191875195  410 DEGFFDLLSRFQSNRMDDQRCCL 432
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
COG3899 COG3899
Predicted ATPase [General function prediction only];
59-322 7.57e-07

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 52.55  E-value: 7.57e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195   59 YAKALEYHHHDLTLARTIGDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELNDKVGEARALYNLGNVYhakgk 138
Cdd:COG3899    728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL----- 802

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  139 sfgcpgpqdvgdfpeevRNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218
Cdd:COG3899    803 -----------------LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGD 865

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR------QLKDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKHLAI 292
Cdd:COG3899    866 AALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAAL 945

                          250       260       270
                   ....*....|....*....|....*....|
gi 1191875195  293 AQELNDRIGEGRACWSLGNAYTALGNHDQA 322
Cdd:COG3899    946 AAAAAAAALAAALALAAAAAAAAAAALAAA 975
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
12-226 1.14e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.01  E-value: 1.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  12 GERLCKSGDCRAGVSFFEAAVQVGTEDlktlSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdrlgEAKASGNLGN 91
Cdd:COG0457    49 GLAYLRLGRYEEALADYEQALELDPDD----AEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGL 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  92 TLKVLGNFDEAVVCCQRHLDISRELndkvgeARALYNLGNVYHAKGKSfgcPGPQDVGDFPEEVRNALQAAVDYYEENLS 171
Cdd:COG0457   119 ALLELGRYDEAIEAYERALELDPDD------ADALYNLGIALEKLGRY---EEALELLEKLEAAALAALLAAALGEAALA 189

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1191875195 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226
Cdd:COG0457   190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
TPR_12 pfam13424
Tetratricopeptide repeat;
184-255 1.26e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.23  E-value: 1.26e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191875195 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 516-538 2.39e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.03  E-value: 2.39e-06
                           10        20
                   ....*....|....*....|...
gi 1191875195  516 DEDFFDILVKCQGSRLDDQRCAP 538
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 121-295 2.54e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.11  E-value: 2.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 121 GEARALYNLGNVYHAKGKsfgcpgpqdvgdfPEEVRNALQAAVDYYEENLslvtalgdraaqgRAFGNLGNTHYLLGNFR 200
Cdd:COG4783     2 ACAEALYALAQALLLAGD-------------YDEAEALLEKALELDPDNP-------------EAFALLGEILLQLGDLD 55

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 201 DAVIAHEQRLLIAKEfgdkaaERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYE 280
Cdd:COG4783    56 EAIVLLHEALELDPD------EPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPD 123

                         170
                  ....*....|....*
gi 1191875195 281 KAIDYHLKHLAIAQE 295
Cdd:COG4783   124 EAIAALEKALELDPD 138
TPR_12 pfam13424
Tetratricopeptide repeat;
42-115 2.76e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.46  E-value: 2.76e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1191875195  42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRE 115
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
GoLoco pfam02188
GoLoco motif;
517-536 4.89e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.18  E-value: 4.89e-06
                          10        20
                  ....*....|....*....|
gi 1191875195 517 EDFFDILVKCQGSRLDDQRC 536
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRC 20
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 171-285 5.38e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 5.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKtl 250
Cdd:COG4235     5 RLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLER-- 76

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1191875195 251 llARQLKDRAVEAQacYSLGNTHTLLQDYEKAIDY 285
Cdd:COG4235    77 --ALALDPDNPEAL--YLLGLAAFQQGDYAEAIAA 107
GoLoco pfam02188
GoLoco motif;
551-572 1.68e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 41.64  E-value: 1.68e-05
                          10        20
                  ....*....|....*....|..
gi 1191875195 551 DDFFSLILRSQAKRMDEQRVLL 572
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
466-487 1.70e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 41.64  E-value: 1.70e-05
                          10        20
                  ....*....|....*....|..
gi 1191875195 466 DEFLDLLASSQSRRLDDQRASF 487
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
TPR_12 pfam13424
Tetratricopeptide repeat;
83-168 1.84e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.14  E-value: 1.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  83 AKASGNLGNTLKVLGNFDEAVVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKsfgcpgpqdvgdfPEEVRNALQ 160
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGR-------------YEEALELLE 69


                  ....*...
gi 1191875195 161 AAVDYYEE 168
Cdd:pfam13424  70 RALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 152-293 1.87e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 1.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 152 PEEVRNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGN 231
Cdd:COG5010    23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE------LYYNLAL 96

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1191875195 232 AYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIA 293
Cdd:COG5010    97 LYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 7-138 2.55e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.41  E-value: 2.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195   7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLktlsAIYSQLGNAYFYLHDYAKALEYHHHDLTLARtigdrlGEAKAS 86
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEAR 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1191875195  87 GNLGNTLKVLGNFDEAVVCCQRHLDISRElndkvgEARALYNLGNVYHAKGK 138
Cdd:COG4783    76 LNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGR 121
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
232-335 3.72e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 3.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 232 AYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYEKAIDYHLkhlaiAQELNDRIGEgrACWSLGN 311
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAE--ALLNLAE 67

                          90       100
                  ....*....|....*....|....
gi 1191875195 312 AYTALGNHDQAMHFAEKHLEISRE 335
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
150-333 6.01e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.52  E-value: 6.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 150 DFPEEVRNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAaerRAYSNL 229
Cdd:COG4785     3 ALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLA---QLYYER 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 230 GNAYIFLGEFETASEyykktlLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDYhlkhLAIAQELNDRIGEgrACWSL 309
Cdd:COG4785    80 GVAYDSLGDYDLAIA------DFDQALELDPDLAEAYNNRGLAYLLLGDYDAALED----FDRALELDPDYAY--AYLNR 147

                         170       180
                  ....*....|....*....|....
gi 1191875195 310 GNAYTALGNHDQAMHFAEKHLEIS 333
Cdd:COG4785   148 GIALYYLGRYELAIADLEKALELD 171
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 550-572 6.36e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.18  E-value: 6.36e-05
                           10        20
                   ....*....|....*....|...
gi 1191875195  550 DDDFFSLILRSQAKRMDEQRVLL 572
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 465-487 7.89e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 39.79  E-value: 7.89e-05
                           10        20
                   ....*....|....*....|...
gi 1191875195  465 TDEFLDLLASSQSRRLDDQRASF 487
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 224-333 8.37e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.69  E-value: 8.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYEKAIdyhlKHLAIAQELNDRigEG 303
Cdd:COG4235    18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAE----ELLERALALDPD--NP 85

                          90       100       110
                  ....*....|....*....|....*....|
gi 1191875195 304 RACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
Cdd:COG4235    86 EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
TPR_7 pfam13176
Tetratricopeptide repeat;
265-299 9.08e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 39.83  E-value: 9.08e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1191875195 265 ACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDR 299
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
TPR_12 pfam13424
Tetratricopeptide repeat;
123-215 9.66e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.83  E-value: 9.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 123 ARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFR 200
Cdd:pfam13424   3 ATALNNLAAVLRRLGR--------------------YDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYE 62

                          90
                  ....*....|....*
gi 1191875195 201 DAVIAHEQRLLIAKE 215
Cdd:pfam13424  63 EALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 160-248 1.50e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.52  E-value: 1.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 160 QAAVDYYEEnlsLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQrllIAKEFGDKAAERRAYSNLGNAYIFLGEF 239
Cdd:COG1729    10 DEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDY 83


                  ....*....
gi 1191875195 240 ETASEYYKK 248
Cdd:COG1729    84 DKARATLEE 92
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 229-333 3.41e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 3.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 229 LGNAYIFLGEFETASEYYKKTLllarQLKDRAVEAQacYSLGNTHTLLQDYEKAIDYHLKHLAIAQElndrigEGRACWS 308
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEAL----ELDPETVEAH--LALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81

                          90       100
                  ....*....|....*....|....*
gi 1191875195 309 LGNAYTALGNHDQAMHFAEKHLEIS 333
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELD 106
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 193-285 3.61e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 3.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 193 HYLLGNFRDAVIAHEQrllIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKtllLARQLKDRAVEAQACYSLGNT 272
Cdd:COG1729     3 LLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLS 76

                          90
                  ....*....|...
gi 1191875195 273 HTLLQDYEKAIDY 285
Cdd:COG1729    77 YLELGDYDKARAT 89
TPR_1 pfam00515
Tetratricopeptide repeat;
224-255 3.79e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 3.79e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1191875195 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 69-357 4.53e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 43.37  E-value: 4.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  69 DLTLARTIGDRLGEA-------------KASGNLGNTLKVLGNFDEAvvccqrhldisRELNDKV-GEARALYNLGNVYH 134
Cdd:NF040586  407 DYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEA-----------RELDEDTlERQRRVLGLGEDHP 475

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 135 ----AKGkSFGcpgpQD---VGDFPEevrnalqaAVDYYEENLSLVTALGDRAAQG--RAFGNLGNTHYLLGNFRDAVIA 205
Cdd:NF040586  476 htlmTAG-GLG----ADlraLGRFRE--------ALELDEETLERHRRVFGEDHPRtlRAANNLAVSLRLLGDYREALEL 542

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 206 HEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEF-------ETASEYYKKTLLLA------RQLKDRAVeaqACYSLG 270
Cdd:NF040586  543 DREVLRRRRRvLGpDHPRTLLSANNLARDLRELGRYaealdllEEALERYREVLGGPdhpdtlRAAKSLAV---ALRRAG 619

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 271 nthtllqDYEKAidyhlkhLAIAQE----LNDRIGEG----RAC-WSLGNAYTALGNHDQAMHFAEKHLEISREVGdksG 341
Cdd:NF040586  620 -------RLEEA-------LELAEDtyerYRRRFGPDhpdtLAAaLSLANDLRALGDADEARELAREVLDRYRRVL---G 682

                         330       340
                  ....*....|....*....|.
gi 1191875195 342 E-----LTARLNLSDLQMVLG 357
Cdd:NF040586  683 EdhpftLACRNNLAVLLRALG 703
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 220-357 5.35e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.56  E-value: 5.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQElndr 299
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVLLHEALELDPD---- 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191875195 300 igEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDksgeltARLNLSDLQMVLG 357
Cdd:COG4783    71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALG 120
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 263-295 5.91e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 5.91e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1191875195  263 AQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQE 295
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 232-322 6.21e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 6.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 232 AYIFLGEFETASEYYKKtllLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKhlaIAQELNDRIGEGRACWSLGN 311
Cdd:COG1729     2 ALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGL 75

                          90
                  ....*....|.
gi 1191875195 312 AYTALGNHDQA 322
Cdd:COG1729    76 SYLELGDYDKA 86
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 175-333 7.59e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 7.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254
Cdd:COG5010     6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1191875195 255 QlkdravEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQelndriGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
Cdd:COG5010    86 N------NPELYYNLALLYSRSGDKDEAKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 224-255 7.79e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 7.79e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1191875195  224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
COG3899 COG3899
Predicted ATPase [General function prediction only];
6-347 1.45e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 41.77  E-value: 1.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195    6 LELALE-GERLCKSGDCRAGVSFFEAAVQVGT-------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 77
Cdd:COG3899    745 LALLLElAEALYLAGRFEEAEALLERALAARAlaalaalRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLG 824

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195   78 DRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELNDKVGEARALYnlgnvyhakgkSFGCPGPQDVGDFPEEVRN 157
Cdd:COG3899    825 DRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA-----------AAAAAAAAAAALAAAAAAA 893

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  158 ALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEfgdkAAERRAYSNLGNAYIFLG 237
Cdd:COG3899    894 ARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAA----AALAAALALAAAAAAAAA 969

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  238 EFETASEYYKKTLLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 317
Cdd:COG3899    970 AALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAAL 1049

                          330       340       350
                   ....*....|....*....|....*....|
gi 1191875195  318 NHDQAMHFAEKHLEISREVGDKSGELTARL 347
Cdd:COG3899   1050 AAAAAAAAAAAALAAAAALLAAAAAAAAAA 1079
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 38-214 2.45e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 2.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195  38 DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISREln 117
Cdd:COG5010     9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 118 dkvgEARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLG 197
Cdd:COG5010    87 ----NPELYYNLALLYSRSGD--------------------KDEAKEYYEK------ALALSPDNPNAYSNLAALLLSLG 136

                         170
                  ....*....|....*..
gi 1191875195 198 NFRDAVIAHEQRLLIAK 214
Cdd:COG5010   137 QDDEAKAALQRALGTSP 153
TPR_1 pfam00515
Tetratricopeptide repeat;
83-112 2.99e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 2.99e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1191875195  83 AKASGNLGNTLKVLGNFDEAVVCCQRHLDI 112
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALEL 30
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 83-115 3.37e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 3.37e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1191875195   83 AKASGNLGNTLKVLGNFDEAVVCCQRHLDISRE 115
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
305-340 3.82e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 3.82e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1191875195 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 340
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_7 pfam13176
Tetratricopeptide repeat;
225-260 3.89e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 3.89e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1191875195 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 260
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
159-256 4.07e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.07  E-value: 4.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 159 LQAAVDYYEENLSLvtalgdRAAQGRAFGNLGNTHYLLGNFRDAvIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGE 238
Cdd:COG3063     8 LEEAEEYYEKALEL------DPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAE------ALLNLAELLLELGD 74

                          90
                  ....*....|....*...
gi 1191875195 239 FETASEYYKKTLLLARQL 256
Cdd:COG3063    75 YDEALAYLERALELDPSA 92
TPR_1 pfam00515
Tetratricopeptide repeat;
263-295 5.96e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 5.96e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1191875195 263 AQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQE 295
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 123-250 6.72e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 6.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 123 ARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEENLSLvtaLGDRAAqgrAFGNLGNTHYLLGNFRDA 202
Cdd:COG4235    17 AEGWLLLGRAYLRLGR--------------------YDEALAAYEKALRL---DPDNAD---ALLDLAEALLAAGDTEEA 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1191875195 203 VIAHEQRLLIAKEFGdkaaerRAYSNLGNAYIFLGEFETASEYYKKTL 250
Cdd:COG4235    71 EELLERALALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLL 112
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
193-296 6.76e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.30  E-value: 6.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875195 193 HYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYyKKTLLLARQlkdravEAQACYSLGNT 272
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAEL 68

                          90       100
                  ....*....|....*....|....
gi 1191875195 273 HTLLQDYEKAIDYHLKHLAIAQEL 296
Cdd:COG3063    69 LLELGDYDEALAYLERALELDPSA 92
TPR_8 pfam13181
Tetratricopeptide repeat;
224-248 7.23e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 34.29  E-value: 7.23e-03
                          10        20
                  ....*....|....*....|....*
gi 1191875195 224 RAYSNLGNAYIFLGEFETASEYYKK 248
Cdd:pfam13181   2 EAYYNLGLIYLKLGDYEEAKEYYEK 26
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 45-75 8.18e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 8.18e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 1191875195   45 IYSQLGNAYFYLHDYAKALEYHHHDLTLART 75
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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