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Conserved domains on  [gi|1191875189|ref|XP_020945755|]
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G-protein-signaling modulator 2 isoform X1 [Sus scrofa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-335 5.97e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.60  E-value: 5.97e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  65 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdrlGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELndkvgeARA 144
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 145 LYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 224
Cdd:COG0457    79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 225 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKtlLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDY 304
Cdd:COG0457   133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1191875189 305 HLKHLAIAQELNDRIGEGRACWSLGNAYTAL 335
Cdd:COG0457   205 QALRKKLAILTLAALAELLLLALALLLALRL 235
GoLoco pfam02188
GoLoco motif;
489-510 4.00e-07

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 46.26  E-value: 4.00e-07
                          10        20
                  ....*....|....*....|..
gi 1191875189 489 EGFFDLLSRFQSNRMDDQRCCL 510
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 594-616 2.17e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


:

Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.41  E-value: 2.17e-06
                           10        20
                   ....*....|....*....|...
gi 1191875189  594 DEDFFDILVKCQGSRLDDQRCAP 616
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
544-565 1.51e-05

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.02  E-value: 1.51e-05
                          10        20
                  ....*....|....*....|..
gi 1191875189 544 DEFLDLLASSQSRRLDDQRASF 565
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
629-650 1.52e-05

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.02  E-value: 1.52e-05
                          10        20
                  ....*....|....*....|..
gi 1191875189 629 DDFFSLILRSQAKRMDEQRVLL 650
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
TPR_7 pfam13176
Tetratricopeptide repeat;
324-359 3.40e-03

Tetratricopeptide repeat;


:

Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.59  E-value: 3.40e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1191875189 324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 359
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-335 5.97e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.60  E-value: 5.97e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  65 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdrlGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELndkvgeARA 144
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 145 LYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 224
Cdd:COG0457    79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 225 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKtlLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDY 304
Cdd:COG0457   133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1191875189 305 HLKHLAIAQELNDRIGEGRACWSLGNAYTAL 335
Cdd:COG0457   205 QALRKKLAILTLAALAELLLLALALLLALRL 235
TPR_12 pfam13424
Tetratricopeptide repeat;
243-314 1.68e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.00  E-value: 1.68e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191875189 243 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQE 314
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
GoLoco pfam02188
GoLoco motif;
489-510 4.00e-07

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 46.26  E-value: 4.00e-07
                          10        20
                  ....*....|....*....|..
gi 1191875189 489 EGFFDLLSRFQSNRMDDQRCCL 510
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 488-510 6.27e-07

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 45.96  E-value: 6.27e-07
                           10        20
                   ....*....|....*....|...
gi 1191875189  488 DEGFFDLLSRFQSNRMDDQRCCL 510
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 594-616 2.17e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.41  E-value: 2.17e-06
                           10        20
                   ....*....|....*....|...
gi 1191875189  594 DEDFFDILVKCQGSRLDDQRCAP 616
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco pfam02188
GoLoco motif;
595-614 4.31e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.56  E-value: 4.31e-06
                          10        20
                  ....*....|....*....|
gi 1191875189 595 EDFFDILVKCQGSRLDDQRC 614
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRC 20
GoLoco pfam02188
GoLoco motif;
544-565 1.51e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.02  E-value: 1.51e-05
                          10        20
                  ....*....|....*....|..
gi 1191875189 544 DEFLDLLASSQSRRLDDQRASF 565
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
629-650 1.52e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.02  E-value: 1.52e-05
                          10        20
                  ....*....|....*....|..
gi 1191875189 629 DDFFSLILRSQAKRMDEQRVLL 650
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 628-650 6.00e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.18  E-value: 6.00e-05
                           10        20
                   ....*....|....*....|...
gi 1191875189  628 DDDFFSLILRSQAKRMDEQRVLL 650
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 543-565 7.45e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.18  E-value: 7.45e-05
                           10        20
                   ....*....|....*....|...
gi 1191875189  543 TDEFLDLLASSQSRRLDDQRASF 565
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 88-376 1.30e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.29  E-value: 1.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  88 DLTLARTIGDRLGEA-------------KASGNLGNTLKVLGNFDEAvvccqrhldisRELNDKV-GEARALYNLGNVYH 153
Cdd:NF040586  407 DYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEA-----------RELDEDTlERQRRVLGLGEDHP 475

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 154 ----AKGkSFGcpgpQD---VGDFPEevrnalqaAVDYYEENLSLVTALGDRAAQG--RAFGNLGNTHYLLGNFRDAVIA 224
Cdd:NF040586  476 htlmTAG-GLG----ADlraLGRFRE--------ALELDEETLERHRRVFGEDHPRtlRAANNLAVSLRLLGDYREALEL 542

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 225 HEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEF-------ETASEYYKKTLLLA------RQLKDRAVeaqACYSLG 289
Cdd:NF040586  543 DREVLRRRRRvLGpDHPRTLLSANNLARDLRELGRYaealdllEEALERYREVLGGPdhpdtlRAAKSLAV---ALRRAG 619

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 290 nthtllqDYEKAidyhlkhLAIAQE----LNDRIGEG----RAC-WSLGNAYTALGNHDQAMHFAEKHLEISREVGdksG 360
Cdd:NF040586  620 -------RLEEA-------LELAEDtyerYRRRFGPDhpdtLAAaLSLANDLRALGDADEARELAREVLDRYRRVL---G 682

                         330       340
                  ....*....|....*....|.
gi 1191875189 361 E-----LTARLNLSDLQMVLG 376
Cdd:NF040586  683 EdhpftLACRNNLAVLLRALG 703
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 282-314 6.05e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 6.05e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1191875189  282 AQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQE 314
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
324-359 3.40e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.59  E-value: 3.40e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1191875189 324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 359
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-335 5.97e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.60  E-value: 5.97e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  65 YSQLGNAYFYLHDYAKALEYHHHDLTLARtigdrlGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELndkvgeARA 144
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDP------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 145 LYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 224
Cdd:COG0457    79 LNNLGLALQALGR--------------------YEEALEDYDK------ALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 225 HEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKtlLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDY 304
Cdd:COG0457   133 YERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALE 204

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1191875189 305 HLKHLAIAQELNDRIGEGRACWSLGNAYTAL 335
Cdd:COG0457   205 QALRKKLAILTLAALAELLLLALALLLALRL 235
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
101-368 5.18e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 83.90  E-value: 5.18e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 101 EAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQA 180
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGR--------------------YEE 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 181 AVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFET 260
Cdd:COG0457    61 ALADYEQ------ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDE 128

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 261 ASEYYKKTLLLARQLkdraveAQACYSLGNTHTLLQDYEKAIDYHLKhlAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 340
Cdd:COG0457   129 AIEAYERALELDPDD------ADALYNLGIALEKLGRYEEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALL 200

                         250       260
                  ....*....|....*....|....*...
gi 1191875189 341 AMHFAEKHLEISREVGDKSGELTARLNL 368
Cdd:COG0457   201 LALEQALRKKLAILTLAALAELLLLALA 228
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 67-351 3.28e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 70.53  E-value: 3.28e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  67 QLGNAYFYLHDYAKALEYhhhdltLARTIGDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRElndkvgEARALY 146
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDL------LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 147 NLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 226
Cdd:COG2956    81 ELAQDYLKAGL--------------------LDRAEELLEK------LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 227 QrllIAKEFGDKAaerRAYSNLGNAYIFLGEFETASEYYKKtlllARQLKDRAVEAQacYSLGNTHTLLQDYEKAIdyhl 306
Cdd:COG2956   135 R---LLKLGPENA---HAYCELAELYLEQGDYDEAIEALEK----ALKLDPDCARAL--LLLAELYLEQGDYEEAI---- 198

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1191875189 307 KHLAIAQELNDRIGEGRAcwSLGNAYTALGNHDQAMHFAEKHLEI 351
Cdd:COG2956   199 AALERALEQDPDYLPALP--RLAELYEKLGDPEEALELLRKALEL 241
COG3899 COG3899
Predicted ATPase [General function prediction only];
175-329 1.76e-12

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 71.04  E-value: 1.76e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  175 RNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF-------RDAVIAHEQRLLIAKEFGDKAAERRAYSN 247
Cdd:COG3899    718 RGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFeeaeallERALAARALAALAALRHGNPPASARAYAN 797

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  248 LGnaYIFLGEFETASEYYKKTLLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS 327
Cdd:COG3899    798 LG--LLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAA 875


                   ..
gi 1191875189  328 LG 329
Cdd:COG3899    876 AA 877
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 178-376 1.61e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.44  E-value: 1.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 178 LQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEfgdkaaERRAYSNLGNAYIFLGE 257
Cdd:COG2956    24 PDKAIDLLEE------ALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 258 FETASEYYKKtlllARQLKDRAVEAQacYSLGNTHTLLQDYEKAIDYHLKHLAIAQElndrigEGRACWSLGNAYTALGN 337
Cdd:COG2956    92 LDRAEELLEK----LLELDPDDAEAL--RLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGD 159

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1191875189 338 HDQAMHFAEKHLEISREvgdksgELTARLNLSDLQMVLG 376
Cdd:COG2956   160 YDEAIEALEKALKLDPD------CARALLLLAELYLEQG 192
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 56-274 1.78e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 1.78e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  56 EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdrlgEAKASGNLGNTLKVLGNFDEAVVCCQRHLDIsrel 135
Cdd:COG3914    72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALAL---- 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 136 ndKVGEARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLL 215
Cdd:COG3914   142 --NPDFAEAYLNLGEALRRLGR--------------------LEEAIAALRR------ALELDPDNAEALNNLGNALQDL 193

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1191875189 216 GNFRDAVIAHEQRLLIAKEFgdkaaeRRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 274
Cdd:COG3914   194 GRLEEAIAAYRRALELDPDN------ADAHSNLLFALRQACDWEVYDRFEELLAALARG 246
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 29-350 2.24e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.05  E-value: 2.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  29 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTlsaiYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdrlgEAKASGNL 108
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEA----HLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLEL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 109 GNTLKVLGNFDEAVVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEn 188
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGD--------------------WEKAIEVLER- 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 189 lslvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFgdkaaeRRAYSNLGNAYIFLGEFETASEYYKKT 268
Cdd:COG2956   136 -----LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAALERA 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 269 LLLARQLkdraveAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDRIgegracwSLGNAYTALGNHDQAMHFAEKH 348
Cdd:COG2956   205 LEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-------ALADLLERKEGLEAALALLERQ 271


                  ..
gi 1191875189 349 LE 350
Cdd:COG2956   272 LR 273
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 175-351 5.37e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 5.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 175 RNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIF 254
Cdd:COG3914    51 LAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLA 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 255 LGEFETASEYYKKTLLLARQLkdraveAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDrigegrACWSLGNAYTA 334
Cdd:COG3914   125 LGRLEEALAALRRALALNPDF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------ALNNLGNALQD 192

                         170
                  ....*....|....*..
gi 1191875189 335 LGNHDQAMHFAEKHLEI 351
Cdd:COG3914   193 LGRLEEAIAAYRRALEL 209
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 171-376 8.67e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.85  E-value: 8.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 171 PEEVRNALQAAVDYYEENLSlvtALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 250
Cdd:COG3914    10 AALAAAALLAAAAAAELALA---AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 251 AYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELndrigeGRACWSLGN 330
Cdd:COG3914    87 LLQALGRYEEALALYRRALALNPD------NAEALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGE 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1191875189 331 AYTALGNHDQAMHFAEKHLEIsrevgdKSGELTARLNLSDLQMVLG 376
Cdd:COG3914   155 ALRRLGRLEEAIAALRRALEL------DPDNAEALNNLGNALQDLG 194
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 199-352 9.98e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 9.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 199 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYKKTLLLARQlkdr 278
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPE------AFALLGEILLQLGDLDEAIVLLHEALELDPD---- 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191875189 279 avEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQElndrigEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG4783    71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELD 136
TPR_12 pfam13424
Tetratricopeptide repeat;
243-314 1.68e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.00  E-value: 1.68e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191875189 243 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQE 314
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 170-312 3.68e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.54  E-value: 3.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 170 FPEEVRNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLG 249
Cdd:COG3914    80 LLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNLG 153

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1191875189 250 NAYIFLGEFETASEYYKKTLLLARQLkdraveAQACYSLGNTHTLLQDYEKAIDYHLKHLAIA 312
Cdd:COG3914   154 EALRRLGRLEEAIAALRRALELDPDN------AEALNNLGNALQDLGRLEEAIAAYRRALELD 210
COG3899 COG3899
Predicted ATPase [General function prediction only];
113-356 5.87e-08

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 56.41  E-value: 5.87e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  113 KVLGNFDEAVVCCQRHLDISRELNDKVGEARALYNLGNVYHAkgksfgcpgpqdVGDFpEEVRNALQAAVDYYEENLSLV 192
Cdd:COG3899    716 LARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYL------------AGRF-EEAEALLERALAARALAALAA 782

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  193 TALGDRAAQGRAFGNLGntHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 272
Cdd:COG3899    783 LRHGNPPASARAYANLG--LLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAG 860

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  273 RQLKDRAVEAQACYSLGnTHTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG3899    861 LETGDAALALLALAAAA-AAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAA 939


                   ....
gi 1191875189  353 REVG 356
Cdd:COG3899    940 AAAA 943
TPR_12 pfam13424
Tetratricopeptide repeat;
286-354 1.18e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 49.31  E-value: 1.18e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1191875189 286 YSLGNTHTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 354
Cdd:pfam13424   7 NNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG3899 COG3899
Predicted ATPase [General function prediction only];
78-341 1.78e-07

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 54.86  E-value: 1.78e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189   78 YAKALEYHHHDLTLARTIGDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELNDKVGEARALYNLGNVYhakgk 157
Cdd:COG3899    728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL----- 802

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  158 sfgcpgpqdvgdfpeevRNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 237
Cdd:COG3899    803 -----------------LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGD 865

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  238 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR------QLKDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKHLAI 311
Cdd:COG3899    866 AALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAAL 945

                          250       260       270
                   ....*....|....*....|....*....|
gi 1191875189  312 AQELNDRIGEGRACWSLGNAYTALGNHDQA 341
Cdd:COG3899    946 AAAAAAAALAAALALAAAAAAAAAAALAAA 975
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 63-305 3.01e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.42  E-value: 3.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  63 AIYSQLGNAYFYLHDYAKALEYhhhdltLARTIGDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRElndkvgEA 142
Cdd:COG2956    77 EALLELAQDYLKAGLLDRAEEL------LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NA 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 143 RALYNLGNVYHAKGKsfgcpgpqdvgdfPEEVRNALQAAVDYYEENLslvtalgdraaqgRAFGNLGNTHYLLGNFRDAV 222
Cdd:COG2956   145 HAYCELAELYLEQGD-------------YDEAIEALEKALKLDPDCA-------------RALLLLAELYLEQGDYEEAI 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 223 IAHEQRLLIAKEFGdkaaerRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAI 302
Cdd:COG2956   199 AALERALEQDPDYL------PALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272


                  ...
gi 1191875189 303 DYH 305
Cdd:COG2956   273 RRH 275
GoLoco pfam02188
GoLoco motif;
489-510 4.00e-07

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 46.26  E-value: 4.00e-07
                          10        20
                  ....*....|....*....|..
gi 1191875189 489 EGFFDLLSRFQSNRMDDQRCCL 510
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
31-245 5.49e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 5.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  31 GERLCKSGDCRAGVSFFEAAVQVGTEDlktlSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTigdrlgEAKASGNLGN 110
Cdd:COG0457    49 GLAYLRLGRYEEALADYEQALELDPDD----AEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGL 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 111 TLKVLGNFDEAVVCCQRHLDISRELndkvgeARALYNLGNVYHAKGKSfgcPGPQDVGDFPEEVRNALQAAVDYYEENLS 190
Cdd:COG0457   119 ALLELGRYDEAIEAYERALELDPDD------ADALYNLGIALEKLGRY---EEALELLEKLEAAALAALLAAALGEAALA 189

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1191875189 191 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 245
Cdd:COG0457   190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 488-510 6.27e-07

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 45.96  E-value: 6.27e-07
                           10        20
                   ....*....|....*....|...
gi 1191875189  488 DEGFFDLLSRFQSNRMDDQRCCL 510
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
TPR_12 pfam13424
Tetratricopeptide repeat;
203-274 8.77e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 8.77e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1191875189 203 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 274
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 140-314 1.30e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.26  E-value: 1.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 140 GEARALYNLGNVYHAKGKsfgcpgpqdvgdfPEEVRNALQAAVDYYEENLslvtalgdraaqgRAFGNLGNTHYLLGNFR 219
Cdd:COG4783     2 ACAEALYALAQALLLAGD-------------YDEAEALLEKALELDPDNP-------------EAFALLGEILLQLGDLD 55

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 220 DAVIAHEQRLLIAKEfgdkaaERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYE 299
Cdd:COG4783    56 EAIVLLHEALELDPD------EPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPD 123

                         170
                  ....*....|....*
gi 1191875189 300 KAIDYHLKHLAIAQE 314
Cdd:COG4783   124 EAIAALEKALELDPD 138
TPR_12 pfam13424
Tetratricopeptide repeat;
61-134 1.88e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 1.88e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1191875189  61 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRE 134
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 594-616 2.17e-06

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 44.41  E-value: 2.17e-06
                           10        20
                   ....*....|....*....|...
gi 1191875189  594 DEDFFDILVKCQGSRLDDQRCAP 616
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 191-304 3.11e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.92  E-value: 3.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 191 LVTALGDRAAQ----GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYYK 266
Cdd:COG4235     2 AIARLRQALAAnpndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLE 75

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1191875189 267 KtlllARQLKDRAVEAQacYSLGNTHTLLQDYEKAIDY 304
Cdd:COG4235    76 R----ALALDPDNPEAL--YLLGLAAFQQGDYAEAIAA 107
GoLoco pfam02188
GoLoco motif;
595-614 4.31e-06

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 43.56  E-value: 4.31e-06
                          10        20
                  ....*....|....*....|
gi 1191875189 595 EDFFDILVKCQGSRLDDQRC 614
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRC 20
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 171-312 1.01e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.11  E-value: 1.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 171 PEEVRNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGN 250
Cdd:COG5010    23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE------LYYNLAL 96

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1191875189 251 AYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIA 312
Cdd:COG5010    97 LYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_12 pfam13424
Tetratricopeptide repeat;
102-187 1.21e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.92  E-value: 1.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 102 AKASGNLGNTLKVLGNFDEAVVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKsfgcpgpqdvgdfPEEVRNALQ 179
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGR-------------YEEALELLE 69


                  ....*...
gi 1191875189 180 AAVDYYEE 187
Cdd:pfam13424  70 RALALAEK 77
GoLoco pfam02188
GoLoco motif;
544-565 1.51e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.02  E-value: 1.51e-05
                          10        20
                  ....*....|....*....|..
gi 1191875189 544 DEFLDLLASSQSRRLDDQRASF 565
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
629-650 1.52e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 42.02  E-value: 1.52e-05
                          10        20
                  ....*....|....*....|..
gi 1191875189 629 DDFFSLILRSQAKRMDEQRVLL 650
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 26-157 1.57e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  26 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLktlsAIYSQLGNAYFYLHDYAKALEYHHHDLTLARtigdrlGEAKAS 105
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEAR 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1191875189 106 GNLGNTLKVLGNFDEAVVCCQRHLDISRElndkvgEARALYNLGNVYHAKGK 157
Cdd:COG4783    76 LNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGR 121
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
251-354 2.73e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 2.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 251 AYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYEKAIDYHLkhlaiAQELNDRIGEgrACWSLGN 330
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAE--ALLNLAE 67

                          90       100
                  ....*....|....*....|....
gi 1191875189 331 AYTALGNHDQAMHFAEKHLEISRE 354
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
169-352 3.71e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.68  E-value: 3.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 169 DFPEEVRNALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAaerRAYSNL 248
Cdd:COG4785     3 ALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLA---QLYYER 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 249 GNAYIFLGEFETASEyykktlLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDYhlkhLAIAQELNDRIGEgrACWSL 328
Cdd:COG4785    80 GVAYDSLGDYDLAIA------DFDQALELDPDLAEAYNNRGLAYLLLGDYDAALED----FDRALELDPDYAY--AYLNR 147

                         170       180
                  ....*....|....*....|....
gi 1191875189 329 GNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG4785   148 GIALYYLGRYELAIADLEKALELD 171
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 243-352 5.49e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 5.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 243 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYEKAIdyhlKHLAIAQELNDRigEG 322
Cdd:COG4235    18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAE----ELLERALALDPD--NP 85

                          90       100       110
                  ....*....|....*....|....*....|
gi 1191875189 323 RACWSLGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG4235    86 EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 628-650 6.00e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.18  E-value: 6.00e-05
                           10        20
                   ....*....|....*....|...
gi 1191875189  628 DDDFFSLILRSQAKRMDEQRVLL 650
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
TPR_12 pfam13424
Tetratricopeptide repeat;
142-234 6.72e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.60  E-value: 6.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 142 ARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFR 219
Cdd:pfam13424   3 ATALNNLAAVLRRLGR--------------------YDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYE 62

                          90
                  ....*....|....*
gi 1191875189 220 DAVIAHEQRLLIAKE 234
Cdd:pfam13424  63 EALELLERALALAEK 77
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 543-565 7.45e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 40.18  E-value: 7.45e-05
                           10        20
                   ....*....|....*....|...
gi 1191875189  543 TDEFLDLLASSQSRRLDDQRASF 565
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
TPR_7 pfam13176
Tetratricopeptide repeat;
284-318 7.71e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.22  E-value: 7.71e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1191875189 284 ACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDR 318
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 88-376 1.30e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.29  E-value: 1.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  88 DLTLARTIGDRLGEA-------------KASGNLGNTLKVLGNFDEAvvccqrhldisRELNDKV-GEARALYNLGNVYH 153
Cdd:NF040586  407 DYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEA-----------RELDEDTlERQRRVLGLGEDHP 475

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 154 ----AKGkSFGcpgpQD---VGDFPEevrnalqaAVDYYEENLSLVTALGDRAAQG--RAFGNLGNTHYLLGNFRDAVIA 224
Cdd:NF040586  476 htlmTAG-GLG----ADlraLGRFRE--------ALELDEETLERHRRVFGEDHPRtlRAANNLAVSLRLLGDYREALEL 542

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 225 HEQRLLIAKE-FG-DKAAERRAYSNLGNAYIFLGEF-------ETASEYYKKTLLLA------RQLKDRAVeaqACYSLG 289
Cdd:NF040586  543 DREVLRRRRRvLGpDHPRTLLSANNLARDLRELGRYaealdllEEALERYREVLGGPdhpdtlRAAKSLAV---ALRRAG 619

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 290 nthtllqDYEKAidyhlkhLAIAQE----LNDRIGEG----RAC-WSLGNAYTALGNHDQAMHFAEKHLEISREVGdksG 360
Cdd:NF040586  620 -------RLEEA-------LELAEDtyerYRRRFGPDhpdtLAAaLSLANDLRALGDADEARELAREVLDRYRRVL---G 682

                         330       340
                  ....*....|....*....|.
gi 1191875189 361 E-----LTARLNLSDLQMVLG 376
Cdd:NF040586  683 EdhpftLACRNNLAVLLRALG 703
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 179-267 1.41e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 1.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 179 QAAVDYYEEnlsLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQrllIAKEFGDKAAERRAYSNLGNAYIFLGEF 258
Cdd:COG1729    10 DEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDY 83


                  ....*....
gi 1191875189 259 ETASEYYKK 267
Cdd:COG1729    84 DKARATLEE 92
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
172-341 2.06e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.37  E-value: 2.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 172 EEVRNALQAAVDYYEENLSLVTALGDRAaqgRAFGNLGNTHYLLGNFRDAVIAHEQRLliaKEFGDKAaerRAYSNLGNA 251
Cdd:COG4785    46 LALAAAALAAAALAAERIDRALALPDLA---QLYYERGVAYDSLGDYDLAIADFDQAL---ELDPDLA---EAYNNRGLA 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 252 YIFLGEFETASEYYKKTLllarQLKDRAVEAQ-----ACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR--- 323
Cdd:COG4785   117 YLLLGDYDAALEDFDRAL----ELDPDYAYAYlnrgiALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDpek 192

                         170       180
                  ....*....|....*....|....
gi 1191875189 324 ------ACWslGNAYTALGNHDQA 341
Cdd:COG4785   193 alalllEDW--ATAYLLQGDTEEA 214
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 248-352 2.41e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 2.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 248 LGNAYIFLGEFETASEYYKKTLllarQLKDRAVEAQacYSLGNTHTLLQDYEKAIDYHLKHLAIAQElndrigEGRACWS 327
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEAL----ELDPETVEAH--LALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81

                          90       100
                  ....*....|....*....|....*
gi 1191875189 328 LGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELD 106
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 239-376 3.33e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.33  E-value: 3.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 239 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQlkdravEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQElndr 318
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVLLHEALELDPD---- 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191875189 319 igEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDksgeltARLNLSDLQMVLG 376
Cdd:COG4783    71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALG 120
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 212-304 3.50e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 3.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 212 HYLLGNFRDAVIAHEQrllIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKtllLARQLKDRAVEAQACYSLGNT 291
Cdd:COG1729     3 LLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLS 76

                          90
                  ....*....|...
gi 1191875189 292 HTLLQDYEKAIDY 304
Cdd:COG1729    77 YLELGDYDKARAT 89
COG3899 COG3899
Predicted ATPase [General function prediction only];
25-366 3.64e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 44.08  E-value: 3.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189   25 LELALE-GERLCKSGDCRAGVSFFEAAVQVGT-------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 96
Cdd:COG3899    745 LALLLElAEALYLAGRFEEAEALLERALAARAlaalaalRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLG 824

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189   97 DRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELNDKVGEARALYnlgnvyhakgkSFGCPGPQDVGDFPEEVRN 176
Cdd:COG3899    825 DRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA-----------AAAAAAAAAAALAAAAAAA 893

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  177 ALQAAVDYYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEfgdkAAERRAYSNLGNAYIFLG 256
Cdd:COG3899    894 ARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAA----AALAAALALAAAAAAAAA 969

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  257 EFETASEYYKKTLLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 336
Cdd:COG3899    970 AALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAAL 1049

                          330       340       350
                   ....*....|....*....|....*....|
gi 1191875189  337 NHDQAMHFAEKHLEISREVGDKSGELTARL 366
Cdd:COG3899   1050 AAAAAAAAAAAALAAAAALLAAAAAAAAAA 1079
TPR_1 pfam00515
Tetratricopeptide repeat;
243-274 3.84e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 3.84e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1191875189 243 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 274
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 194-352 4.63e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 4.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 194 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 273
Cdd:COG5010     6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1191875189 274 QlkdravEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQelndriGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 352
Cdd:COG5010    86 N------NPELYYNLALLYSRSGDKDEAKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 282-314 6.05e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 6.05e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1191875189  282 AQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQE 314
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 251-341 6.08e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 6.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 251 AYIFLGEFETASEYYKKtllLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKhlaIAQELNDRIGEGRACWSLGN 330
Cdd:COG1729     2 ALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGL 75

                          90
                  ....*....|.
gi 1191875189 331 AYTALGNHDQA 341
Cdd:COG1729    76 SYLELGDYDKA 86
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 243-274 7.96e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 7.96e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1191875189  243 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 274
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 57-233 1.25e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.94  E-value: 1.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  57 DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISREln 136
Cdd:COG5010     9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 137 dkvgEARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEEnlslvtALGDRAAQGRAFGNLGNTHYLLG 216
Cdd:COG5010    87 ----NPELYYNLALLYSRSGD--------------------KDEAKEYYEK------ALALSPDNPNAYSNLAALLLSLG 136

                         170
                  ....*....|....*..
gi 1191875189 217 NFRDAVIAHEQRLLIAK 233
Cdd:COG5010   137 QDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
178-275 3.14e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.46  E-value: 3.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 178 LQAAVDYYEENLSLvtalgdRAAQGRAFGNLGNTHYLLGNFRDAvIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGE 257
Cdd:COG3063     8 LEEAEEYYEKALEL------DPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAE------ALLNLAELLLELGD 74

                          90
                  ....*....|....*...
gi 1191875189 258 FETASEYYKKTLLLARQL 275
Cdd:COG3063    75 YDEALAYLERALELDPSA 92
TPR_1 pfam00515
Tetratricopeptide repeat;
102-131 3.25e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 3.25e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1191875189 102 AKASGNLGNTLKVLGNFDEAVVCCQRHLDI 131
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALEL 30
TPR_7 pfam13176
Tetratricopeptide repeat;
324-359 3.40e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.59  E-value: 3.40e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1191875189 324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 359
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_7 pfam13176
Tetratricopeptide repeat;
244-279 3.40e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.59  E-value: 3.40e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1191875189 244 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 279
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 102-134 3.45e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 3.45e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1191875189  102 AKASGNLGNTLKVLGNFDEAVVCCQRHLDISRE 134
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 142-283 3.98e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 3.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 142 ARALYNLGNVYHAKGKsfgcpgpqdvgdfpeevrnaLQAAVDYYEENLSLvtaLGDRAAqgrAFGNLGNTHYLLGNFRDA 221
Cdd:COG4235    17 AEGWLLLGRAYLRLGR--------------------YDEALAAYEKALRL---DPDNAD---ALLDLAEALLAAGDTEEA 70

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1191875189 222 VIAHEQRLLIAKEFGdkaaerRAYSNLGNAYIFLGEFETASEYYKKTL-LLARQLKDRAVEAQ 283
Cdd:COG4235    71 EELLERALALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLLaLLPADAPARLLEAS 127
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
212-315 5.26e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 5.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 212 HYLLGNFRDAVIAHEQRLLIAKEFGDkaaerrAYSNLGNAYIFLGEFETASEYyKKTLLLARQlkdravEAQACYSLGNT 291
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAEL 68

                          90       100
                  ....*....|....*....|....
gi 1191875189 292 HTLLQDYEKAIDYHLKHLAIAQEL 315
Cdd:COG3063    69 LLELGDYDEALAYLERALELDPSA 92
TPR_1 pfam00515
Tetratricopeptide repeat;
282-314 6.22e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 6.22e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1191875189 282 AQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQE 314
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_8 pfam13181
Tetratricopeptide repeat;
243-267 8.16e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 34.29  E-value: 8.16e-03
                          10        20
                  ....*....|....*....|....*
gi 1191875189 243 RAYSNLGNAYIFLGEFETASEYYKK 267
Cdd:pfam13181   2 EAYYNLGLIYLKLGDYEEAKEYYEK 26
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 107-230 8.39e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.91  E-value: 8.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 107 NLGNTLKVLGNFDEAVVCCQRHLDISRElndkvgEARALYNLGNVYHAKGKsfgcpgpqdvgdfPEEVRNALQAAVDYYE 186
Cdd:COG4235    22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGD-------------TEEAEELLERALALDP 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1191875189 187 ENLslvtalgdraaqgRAFGNLGNTHYLLGNFRDAvIAHEQRLL 230
Cdd:COG4235    83 DNP-------------EALYLLGLAAFQQGDYAEA-IAAWQKLL 112
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 64-94 8.53e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 8.53e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 1191875189   64 IYSQLGNAYFYLHDYAKALEYHHHDLTLART 94
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
61-269 8.73e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.36  E-value: 8.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189  61 LSAIYSQLGNAYFYLHDYAKALEyhhhDLTLArtIGDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLdisrELNDKvg 140
Cdd:COG4785    72 LAQLYYERGVAYDSLGDYDLAIA----DFDQA--LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL----ELDPD-- 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191875189 141 EARALYNLGNVYHAKGKsfgcpgpqdvgdfPEEVRNALQAAVDYYEENlslvtalgdraaqgrafgnlgnthyllgnfrd 220
Cdd:COG4785   140 YAYAYLNRGIALYYLGR-------------YELAIADLEKALELDPND-------------------------------- 174

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1191875189 221 aVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 269
Cdd:COG4785   175 -PERALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLAL 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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