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    cxxc1b CXXC finger protein 1b [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115556566, updated on 17-Mar-2024

    Summary

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    Gene symbol
    cxxc1b
    Gene description
    CXXC finger protein 1b
    See related
    Ensembl:ENSGMOG00000002734
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Also known as
    cxxc1
    Orthologs
    zebrafish all
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    Genomic context

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    See cxxc1b in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 13 NC_044060.1 (17530296..17540171, complement)

    Chromosome 13 - NC_044060.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 120b Neighboring gene methyl-CpG binding domain protein 1b Neighboring gene transcription factor binding to IGHM enhancer 3b Neighboring gene G protein nucleolar 3 like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044060.1 Chromosome 13 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CXXC-type zinc finger protein 1
    Names
    CXXC finger protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044060.1 Reference gadMor3.0 Primary Assembly

      Range
      17530296..17540171 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030373667.1 → XP_030229527.1  CXXC-type zinc finger protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C4YYK6, A0A8C5C9E4
      Related
      ENSGMOP00000002893.2, ENSGMOT00000002984.2
      Conserved Domains (3) summary
      cd15553
      Location:26 → 71
      PHD_Cfp1; PHD finger found in CXXC-type zinc finger protein 1 (Cfp1)
      pfam02008
      Location:119 → 167
      zf-CXXC; CXXC zinc finger domain
      pfam12269
      Location:318 → 551
      zf-CpG_bind_C; CpG binding protein zinc finger C terminal domain

    2. XM_030373666.1 → XP_030229526.1  CXXC-type zinc finger protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C5C9E4
      Conserved Domains (3) summary
      cd15553
      Location:26 → 71
      PHD_Cfp1; PHD finger found in CXXC-type zinc finger protein 1 (Cfp1)
      pfam02008
      Location:119 → 167
      zf-CXXC; CXXC zinc finger domain
      pfam12269
      Location:321 → 554
      zf-CpG_bind_C; CpG binding protein zinc finger C terminal domain

    3. XM_030373669.1 → XP_030229529.1  CXXC-type zinc finger protein 1 isoform X3

      Conserved Domains (3) summary
      cd15553
      Location:26 → 71
      PHD_Cfp1; PHD finger found in CXXC-type zinc finger protein 1 (Cfp1)
      pfam02008
      Location:119 → 167
      zf-CXXC; CXXC zinc finger domain
      pfam12269
      Location:321 → 426
      zf-CpG_bind_C; CpG binding protein zinc finger C terminal domain
    Nucleotide Protein
    Heading Accession and Version

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