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    IFT46 intraflagellar transport 46 [ Bos taurus (domestic cattle) ]

    Gene ID: 505579, updated on 24-Aug-2024

    Summary

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    Official Symbol
    IFT46provided by VGNC
    Official Full Name
    intraflagellar transport 46provided by VGNC
    Primary source
    VGNC:VGNC:30069
    See related
    BGD:BT20896; Ensembl:ENSBTAG00000012941
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C11orf60; C15H11orf60
    Orthologs
    human mouse all
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    Genomic context

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    See IFT46 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (29205366..29219617, complement)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 36 Neighboring gene transmembrane protein 25 Neighboring gene microRNA mir-2285ak Neighboring gene archain 1 Neighboring gene pleckstrin homology like domain family B member 1 Neighboring gene microRNA mir-12011

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Knockdown of the intraflagellar transport protein IFT46 stimulates selective gene expression in mouse chondrocytes and affects early development in zebrafish. Gouttenoire J, et al. J Biol Chem, 2007 Oct 19. PMID 17720815

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Characterization of a similar gene in mouse and zebrafish.
      Title: Knockdown of the intraflagellar transport protein IFT46 stimulates selective gene expression in mouse chondrocytes and affects early development in zebrafish.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC139434

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intraciliary transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intraciliary transport particle B IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in motile cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    intraflagellar transport protein 46 homolog
    Names
    intraflagellar transport 46 homolog
    intraflagellar transport protein IFT46

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075209.1 → NP_001068677.1  intraflagellar transport protein 46 homolog

      See identical proteins and their annotated locations for NP_001068677.1

      Status: PROVISIONAL

      Source sequence(s)
      BC116107
      UniProtKB/Swiss-Prot
      Q1LZB4
      Related
      ENSBTAP00000017195.4, ENSBTAT00000017195.5
      Conserved Domains (1) summary
      pfam12317
      Location:62 → 264
      IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      29205366..29219617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005215916.5 → XP_005215973.1  intraflagellar transport protein 46 homolog isoform X1

      UniProtKB/TrEMBL
      A0AAA9SM61
      Related
      ENSBTAP00000085023.1, ENSBTAT00000094547.1
      Conserved Domains (1) summary
      pfam12317
      Location:62 → 264
      IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal

    RNA

    1. XR_009490572.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1LZB4.1 GenPept UniProtKB/Swiss-Prot:Q1LZB4

    Gene LinkOut

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