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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001347518.2 → NP_001334447.1 protein O-mannosyl-transferase TMTC1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an in-frame exon in the central coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AC126683, AC142274
- Consensus CDS
-
CCDS85189.1
- UniProtKB/Swiss-Prot
-
Q3UV71
- Related
- ENSMUSP00000098335.4, ENSMUST00000100772.10
-
NM_001411790.1 → NP_001398719.1 protein O-mannosyl-transferase TMTC1 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC126683, AC142274
-
NM_198967.6 → NP_945318.2 protein O-mannosyl-transferase TMTC1 isoform 1
See identical proteins and their annotated locations for NP_945318.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC126683, AC142274
- Consensus CDS
-
CCDS51960.1
- UniProtKB/Swiss-Prot
- E9QM13, Q3UV71, Q8BQV5
- Related
- ENSMUSP00000056353.9, ENSMUST00000060095.15
- Conserved Domains (3) summary
-
- TIGR02917
Location:529 → 942
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:642 → 670
- TPR; TPR repeat [structural motif]
- pfam08409
Location:351 → 425
- DUF1736; Domain of unknown function (DUF1736)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000072.7 Reference GRCm39 C57BL/6J
- Range
-
148133928..148346222 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036166270.1 → XP_036022163.1 protein O-mannosyl-transferase TMTC1 isoform X1
- Conserved Domains (3) summary
-
- TIGR02917
Location:529 → 909
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:642 → 670
- TPR; TPR repeat [structural motif]
- pfam08409
Location:352 → 425
- DUF1736; Domain of unknown function (DUF1736)
-
XM_036166273.1 → XP_036022166.1 protein O-mannosyl-transferase TMTC1 isoform X4
- Conserved Domains (3) summary
-
- TIGR02917
Location:412 → 816
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:516 → 544
- TPR; TPR repeat [structural motif]
- pfam08409
Location:264 → 337
- DUF1736; Domain of unknown function (DUF1736)
-
XM_036166272.1 → XP_036022165.1 protein O-mannosyl-transferase TMTC1 isoform X3
- Conserved Domains (3) summary
-
- TIGR02917
Location:441 → 854
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:554 → 582
- TPR; TPR repeat [structural motif]
- pfam08409
Location:264 → 337
- DUF1736; Domain of unknown function (DUF1736)
-
XM_006507072.5 → XP_006507135.1 protein O-mannosyl-transferase TMTC1 isoform X8
- Conserved Domains (3) summary
-
- TIGR02917
Location:180 → 593
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:293 → 321
- TPR; TPR repeat [structural motif]
- pfam08409
Location:2 → 76
- DUF1736; Domain of unknown function (DUF1736)
-
XM_036166271.1 → XP_036022164.1 protein O-mannosyl-transferase TMTC1 isoform X2
- Conserved Domains (4) summary
-
- COG0457
Location:552 → 788
- TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
- PRK10049
Location:732 → 864
- pgaA; outer membrane protein PgaA; Provisional
- sd00006
Location:642 → 670
- TPR; TPR repeat [structural motif]
- pfam08409
Location:352 → 425
- DUF1736; Domain of unknown function (DUF1736)
-
XM_017321670.3 → XP_017177159.1 protein O-mannosyl-transferase TMTC1 isoform X7
- Conserved Domains (3) summary
-
- TIGR02917
Location:505 → 649
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:543 → 571
- TPR; TPR repeat [structural motif]
- pfam08409
Location:351 → 425
- DUF1736; Domain of unknown function (DUF1736)
-
XM_011241620.4 → XP_011239922.1 protein O-mannosyl-transferase TMTC1 isoform X6
- Conserved Domains (3) summary
-
- TIGR02917
Location:505 → 649
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:543 → 571
- TPR; TPR repeat [structural motif]
- pfam08409
Location:351 → 425
- DUF1736; Domain of unknown function (DUF1736)
-
XM_011241618.4 → XP_011239920.1 protein O-mannosyl-transferase TMTC1 isoform X5
- Conserved Domains (3) summary
-
- TIGR02917
Location:505 → 649
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:543 → 571
- TPR; TPR repeat [structural motif]
- pfam08409
Location:351 → 425
- DUF1736; Domain of unknown function (DUF1736)
RNA
-
XR_004942979.1 RNA Sequence