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Conserved domains on  [gi|1907173070|ref|XP_036022163|]
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protein O-mannosyl-transferase TMTC1 isoform X1 [Mus musculus]

Protein Classification

transmembrane and TPR repeat-containing protein( domain architecture ID 13750405)

transmembrane and TPR repeat-containing (TMTC) protein functions as a protein O-mannosyl-transferase, catalyzing the transfer of mannosyl residues to the hydroxyl group of serine or threonine residues

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 547-798 8.34e-45

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 162.98  E-value: 8.34e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 547 YNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEK 623
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLyrrRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 624 TEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAI 703
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 704 QLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELrLA 782
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LA 250

                         250
                  ....*....|....*.
gi 1907173070 783 LAQVLAVMGQTKEAEK 798
Cdd:COG2956   251 LADLLERKEGLEAALA 266
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 351-425 2.88e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


:

Pssm-ID: 462468  Cd Length: 75  Bit Score: 133.81  E-value: 2.88e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907173070 351 GGTMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPITLCYDWQVGSIPLVETIWDVRNLATILLAVVMA 425
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
703-915 7.30e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 113.18  E-value: 7.30e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 703 IQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVART-AEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRL 781
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 782 ALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPkvisELFFTKGNQLRE 861
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA----DALYNLGIALEK 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907173070 862 QNLLDKAFEgSYVSARAYYERALKLVPDSKLLKENLAKLDRLERRLQEVRERDQ 915
Cdd:COG0457   157 LGRYEEALE-LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 547-798 8.34e-45

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 162.98  E-value: 8.34e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 547 YNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEK 623
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLyrrRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 624 TEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAI 703
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 704 QLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELrLA 782
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LA 250

                         250
                  ....*....|....*.
gi 1907173070 783 LAQVLAVMGQTKEAEK 798
Cdd:COG2956   251 LADLLERKEGLEAALA 266
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 351-425 2.88e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 133.81  E-value: 2.88e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907173070 351 GGTMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPITLCYDWQVGSIPLVETIWDVRNLATILLAVVMA 425
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 529-909 9.92e-29

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 124.04  E-value: 9.92e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 529 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHP 605
Cdd:TIGR02917 315 YQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAylaLGDFEKAAEYLAKATELDP 394

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 606 QHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVF 685
Cdd:TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 686 LVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVART-AEVLSPLGALYYNTGRHKEALE 764
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKnLRAILALAGLYLRTGNEEEAVA 554

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 765 VYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKD 844
Cdd:TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907173070 845 PKVISELFFTkgnQLREQNlldkafegsYVSARAYYERALKLVPDSKLLKENLAKLDRLERRLQE 909
Cdd:TIGR02917 635 ALALLLLADA---YAVMKN---------YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
703-915 7.30e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 113.18  E-value: 7.30e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 703 IQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVART-AEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRL 781
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 782 ALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPkvisELFFTKGNQLRE 861
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA----DALYNLGIALEK 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907173070 862 QNLLDKAFEgSYVSARAYYERALKLVPDSKLLKENLAKLDRLERRLQEVRERDQ 915
Cdd:COG0457   157 LGRYEEALE-LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 589-840 5.79e-14

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 73.82  E-value: 5.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 589 DMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPD-FADAYSSLASLLAEqerfKEAEDIYQA 667
Cdd:cd24142    15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSGG----EEALQYYEK 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 668 GIKNCpdssdlhnnyavflvdsgfpEKAVAHYQQAIQLSPSHHVAVVN-LGRLYRSLGE------------NSKAEEWYR 734
Cdd:cd24142    91 GIEIL--------------------EEELQALQAASAEAEEEAEELKRkLSSALCALAEiymtdlcdepdaEQRCEELIT 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 735 RALKVART-AEVLSPLGALYYNTGRHKEALEVYREAVSL---------------------QPSqRELRLALAQVLAVMGQ 792
Cdd:cd24142   151 KALELDPTnPEALQTLASLRISQQRPDEAKEALRRSLELwkdlkeedeeeaeedeaeeedVPS-YEFRISLAKLLIELEM 229

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907173070 793 TKEAEKITSHIVSEEPRCLE-------CYRLLS--AIHSKQEHHGKALEAIEKALQL 840
Cdd:cd24142   230 YEEALEVLEQLLDEDDEDVEvwyllgwAYYLLGekEQEEAAELLRDARELLEKALKL 286
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 555-913 9.36e-14

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 75.89  E-value: 9.36e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  555 DQGRNKEAIYHYRTALKLYPRHASALNNLG---TLTKDMAEAKMYYQKALQLHPQHnralFNLGNLlKSQEKTEEAIMLL 631
Cdd:PRK11447   281 DSGQGGKAIPELQQAVRANPKDSEALGALGqaySQQGDRARAVAQFEKALALDPHS----SNRDKW-ESLLKVNRYWLLI 355

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  632 KEsikygpdfADAysslaSLLAEQERfkEAEDIYQAGIKNCPDSSdlhnnYAVF-LVDSGFPEK----AVAHYQQAIQLS 706
Cdd:PRK11447   356 QQ--------GDA-----ALKANNLA--QAERLYQQARQVDNTDS-----YAVLgLGDVAMARKdyaaAERYYQQALRMD 415

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  707 PSHHVAVVNLGRLYRSLGENsKAEEWY--------------RRALKVAR---TAEVLSplgalyyNTGRHKEALEVYREA 769
Cdd:PRK11447   416 PGNTNAVRGLANLYRQQSPE-KALAFIaslsasqrrsiddiERSLQNDRlaqQAEALE-------NQGKWAQAAELQRQR 487

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  770 VSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLE---CYRLLSAIHSKQEHHGKALEAIEKAlQLKPK--- 843
Cdd:PRK11447   488 LALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEqvyAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNiqe 566

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  844 -DPKVISELFFTKGNQLREQN---------------------LLDKAFE-GSYVSARAYYERALKLVPDSKLLKENLAKL 900
Cdd:PRK11447   567 lAQRLQSDQVLETANRLRDSGkeaeaeallrqqppstridltLADWAQQrGDYAAARAAYQRVLTREPGNADARLGLIEV 646

                          410
                   ....*....|...
gi 1907173070  901 DRLERRLQEVRER 913
Cdd:PRK11447   647 DIAQGDLAAARAQ 659
TPR_12 pfam13424
Tetratricopeptide repeat;
714-775 1.66e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.39  E-value: 1.66e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907173070 714 VNLGRLYRSLGENSKAEEWYRRALKVAR---------TAEVLSPLGALYYNTGRHKEALEVYREAVSLQPS 775
Cdd:pfam13424   7 NNLAAVLRRLGRYDEALELLEKALEIARrllgpdhplTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 753-899 4.10e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 48.13  E-value: 4.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 753 YY-------NTGRHKEALEVYREAVSLQ--PSQRelrlalAQVLAVMGqtkeaekitshivseeprclecyrllsAIHSK 823
Cdd:PRK02603   38 YYrdgmsaqADGEYAEALENYEEALKLEedPNDR------SYILYNMG---------------------------IIYAS 84

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907173070 824 QEHHGKALEAIEKALQLKPKDP---KVISELFFTKGNQLREQNLLDKAfEGSYVSARAYYERALKLVPDSKLLKENLAK 899
Cdd:PRK02603   85 NGEHDKALEYYHQALELNPKQPsalNNIAVIYHKRGEKAEEAGDQDEA-EALFDKAAEYWKQAIRLAPNNYIEAQNWLK 162
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 602-815 7.11e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 46.84  E-value: 7.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 602 QLHPQHNRALFNLGNLLKSQEKTEEAIML-------LKESIKYGPDFAD---AYSSLASLLAEQERFKEA----EDIYQA 667
Cdd:NF040586  428 PDDRQTLRLRFHLANALRSLGRYEEARELdedtlerQRRVLGLGEDHPHtlmTAGGLGADLRALGRFREAleldEETLER 507

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 668 ----GIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQ-----LSPSHH---VAVVNLGRLYRSLGENSKA----EE 731
Cdd:NF040586  508 hrrvFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRrrrrvLGPDHPrtlLSANNLARDLRELGRYAEAldllEE 587

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 732 WYRRALKVARTAEVLSPLGAL------YYNTGRHKEALE----VYREAVSLQPSQRELRLA----LAQVLAVMGQTKEAE 797
Cdd:NF040586  588 ALERYREVLGGPDHPDTLRAAkslavaLRRAGRLEEALElaedTYERYRRRFGPDHPDTLAaalsLANDLRALGDADEAR 667

                         250
                  ....*....|....*...
gi 1907173070 798 KITShivseepRCLECYR 815
Cdd:NF040586  668 ELAR-------EVLDRYR 678
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 688-796 7.53e-04

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 40.75  E-value: 7.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  688 DSGFPEKAVAHYQQAIqlspshhvavvnlgRLYR--SLGENSkAEEW---YRRALKVARtAEVLSPLGALYYNTGRHKEA 762
Cdd:smart01043  17 LAADPEAALALLEAAL--------------ALYRgpLLADVP-DEDWaeaERERLRELR-LEALEALAEALLALGRHEEA 80

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907173070  763 LEVYREAVSLQPSQRELRLALAQVLAVMGQTKEA 796
Cdd:smart01043  81 LALLERLLALDPLRERLHRLLMRALYRAGRRAEA 114
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 561-798 2.09e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 41.83  E-value: 2.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 561 EAIYHYRTALkLYPRHASALNNLGTLTKDMAEAKmYYQKALQL----------------HPQHNRALFNLGNLLKSQEKT 624
Cdd:NF040586  544 REVLRRRRRV-LGPDHPRTLLSANNLARDLRELG-RYAEALDLleealeryrevlggpdHPDTLRAAKSLAVALRRAGRL 621

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 625 EEAIMLLKESI-----KYGPDFADAYS---SLASLLAEQERFKEAEDIyqagikncpdssdlhnnyavflvdsgfPEKAV 696
Cdd:NF040586  622 EEALELAEDTYeryrrRFGPDHPDTLAaalSLANDLRALGDADEAREL---------------------------AREVL 674

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 697 AHYQQAIQLS-PSHHVAVVNLGRLYRSLGENSKAEEWYRRALkvARTAEVLSP-----------LGALYYNTGRHKEALE 764
Cdd:NF040586  675 DRYRRVLGEDhPFTLACRNNLAVLLRALGDPEEARELAEAAL--EGLRERLGPdhpytlaaavnLANDLAALGDLDAALG 752

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1907173070 765 VYREAVSLQPSQRELRL------------ALAQVLAVMGQTKEAEK 798
Cdd:NF040586  753 EEALERLRRLLGEDLRAgpdhpdtlacaaNLALDLRATGRTEEAEE 798
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 547-798 8.34e-45

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 162.98  E-value: 8.34e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 547 YNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEK 623
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLyrrRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 624 TEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAI 703
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 704 QLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELrLA 782
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LA 250

                         250
                  ....*....|....*.
gi 1907173070 783 LAQVLAVMGQTKEAEK 798
Cdd:COG2956   251 LADLLERKEGLEAALA 266
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 531-773 9.19e-41

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 151.42  E-value: 9.19e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 531 LFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHPQH 607
Cdd:COG2956    30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDylkAGLLDRAEELLEKLLELDPDD 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 608 NRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLV 687
Cdd:COG2956   110 AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 688 DSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVLSPLGALYYNTGRHKEALEVYR 767
Cdd:COG2956   190 EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLE 269


                  ....*.
gi 1907173070 768 EAVSLQ 773
Cdd:COG2956   270 RQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
570-809 4.79e-40

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 148.23  E-value: 4.79e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 570 LKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYS 646
Cdd:COG0457     1 LELDPDDAEAYNNLGLAyrrLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 647 SLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGEN 726
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 727 SKAEEWYRRALKVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSE 806
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                  ...
gi 1907173070 807 EPR 809
Cdd:COG0457   241 YQY 243
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
540-769 1.10e-38

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 144.38  E-value: 1.10e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 540 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHPQHNRALFNLGN 616
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAylrLGRYEEALADYEQALELDPDDAEALNNLGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 617 LLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAV 696
Cdd:COG0457    85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907173070 697 AHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVLSPLGALYYNTGRHKEALEVYREA 769
Cdd:COG0457   165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 612-885 3.74e-38

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 143.72  E-value: 3.74e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 612 FNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGF 691
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 692 PEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEVYREAV 770
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 771 SLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPkvise 850
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD----- 246

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1907173070 851 LFFTKGNQLREQNLLDKafegsyvsARAYYERALK 885
Cdd:COG2956   247 LLLALADLLERKEGLEA--------ALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 586-839 2.36e-37

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 141.41  E-value: 2.36e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 586 LTKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIY 665
Cdd:COG2956    20 LNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 666 QAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVART-AE 744
Cdd:COG2956   100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDcAR 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 745 VLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLEcYRLLSAIHSKQ 824
Cdd:COG2956   180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERK 258

                         250
                  ....*....|....*
gi 1907173070 825 EHHGKALEAIEKALQ 839
Cdd:COG2956   259 EGLEAALALLERQLR 273
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 351-425 2.88e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 133.81  E-value: 2.88e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907173070 351 GGTMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPITLCYDWQVGSIPLVETIWDVRNLATILLAVVMA 425
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 648-912 2.00e-35

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 136.01  E-value: 2.00e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 648 LASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENS 727
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 728 KAEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSE 806
Cdd:COG2956    94 RAEELLEKLLELDpDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 807 EPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKAFEgsyvsaraYYERALKL 886
Cdd:COG2956   174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL----AELYEKLGDPEEALE--------LLRKALEL 241

                         250       260
                  ....*....|....*....|....*.
gi 1907173070 887 VPDSKLLkENLAKLDRLERRLQEVRE 912
Cdd:COG2956   242 DPSDDLL-LALADLLERKEGLEAALA 266
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 561-767 9.68e-34

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 138.59  E-value: 9.68e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 561 EAIYHYRTALKLYPRHASALNNLGtltkDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPD 640
Cdd:COG3914    69 AAAAALLLLAALLELAALLLQALG----RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 641 FADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLY 720
Cdd:COG3914   145 FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1907173070 721 RSLGENSKAEEWYRRALKVARTAEVLSPLGALYYNTGRHKEALEVYR 767
Cdd:COG3914   225 RQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALAR 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 529-738 8.52e-31

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 122.53  E-value: 8.52e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 529 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHP 605
Cdd:COG2956    62 IRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIyeqEGDWEKAIEVLERLLKLGP 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 606 QHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVF 685
Cdd:COG2956   142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1907173070 686 LVDSGFPEKAVAHYQQAIQLSPSHHVaVVNLGRLYRSLGENSKAEEWYRRALK 738
Cdd:COG2956   222 YEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
673-912 1.95e-30

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 120.50  E-value: 1.95e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 673 PDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVA-RTAEVLSPLGA 751
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDpDDAEALNNLGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 752 LYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKAL 831
Cdd:COG0457    85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 832 EAIEKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFEGSYVSARAYYERALKLVPDSKLLKENLAKLDRLERRLQEVR 911
Cdd:COG0457   165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244


                  .
gi 1907173070 912 E 912
Cdd:COG0457   245 A 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
529-666 2.16e-29

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 117.42  E-value: 2.16e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 529 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHP 605
Cdd:COG0457    28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAlqaLGRYEEALEDYDKALELDP 107

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907173070 606 QHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQ 666
Cdd:COG0457   108 DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 529-909 9.92e-29

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 124.04  E-value: 9.92e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 529 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHP 605
Cdd:TIGR02917 315 YQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAylaLGDFEKAAEYLAKATELDP 394

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 606 QHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVF 685
Cdd:TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 686 LVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVART-AEVLSPLGALYYNTGRHKEALE 764
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKnLRAILALAGLYLRTGNEEEAVA 554

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 765 VYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKD 844
Cdd:TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907173070 845 PKVISELFFTkgnQLREQNlldkafegsYVSARAYYERALKLVPDSKLLKENLAKLDRLERRLQE 909
Cdd:TIGR02917 635 ALALLLLADA---YAVMKN---------YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
703-915 7.30e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 113.18  E-value: 7.30e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 703 IQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVART-AEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRL 781
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 782 ALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPkvisELFFTKGNQLRE 861
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA----DALYNLGIALEK 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907173070 862 QNLLDKAFEgSYVSARAYYERALKLVPDSKLLKENLAKLDRLERRLQEVRERDQ 915
Cdd:COG0457   157 LGRYEEALE-LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 574-803 9.79e-28

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 119.71  E-value: 9.79e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 574 PRHASALNNLGTLTKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEA---------IMLLKESIKYGPDFADA 644
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAaaaallalaAGEAAAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 645 YSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLG 724
Cdd:COG3914    81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 725 ENSKAEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHI 803
Cdd:COG3914   161 RLEEAIAALRRALELDpDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 556-798 5.46e-26

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 115.18  E-value: 5.46e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 556 QGRNKEAIYHYRTALKLYPRHASALNNLG---TLTKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLK 632
Cdd:TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLAdayAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 633 ESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDL--------------------------HNNYAVFL 686
Cdd:TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAiklhrallasgntaeavktleawlktHPNDAVLR 773

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 687 V-------DSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLgENSKAEEWYRRALKVA-RTAEVLSPLGALYYNTGR 758
Cdd:TIGR02917 774 TalaelylAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLApNIPAILDTLGWLLVEKGE 852

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1907173070 759 HKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEK 798
Cdd:TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 537-779 1.66e-25

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 112.78  E-value: 1.66e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 537 QTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLtkDMAEAKMYYQKALQLHPQHNRALFNLGN 616
Cdd:COG3914     9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAA--LLALAAGEAAAAAAALLLLAALLELAAL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 617 LLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAV 696
Cdd:COG3914    87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 697 AHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVART-AEVLSPLGALYYNTGRHKEALEVYREAVSLQPS 775
Cdd:COG3914   167 AALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDnADAHSNLLFALRQACDWEVYDRFEELLAALARG 246


                  ....
gi 1907173070 776 QREL 779
Cdd:COG3914   247 PSEL 250
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 606-738 1.02e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 100.65  E-value: 1.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 606 QHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVF 685
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1907173070 686 LVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALK 738
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 543-675 8.19e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 97.96  E-value: 8.19e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 543 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHPQHNRALFNLGNLLK 619
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEIllqLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1907173070 620 SQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDS 675
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 532-899 1.49e-23

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 107.48  E-value: 1.49e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 532 FRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGT---LTKDMAEAKMYYQKALQLHPQHN 608
Cdd:TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQyylGKGQLKKALAILNEAADAAPDSP 601

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 609 RALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVD 688
Cdd:TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 689 SGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVLSPLGALYYNTGRHKEALEVYRE 768
Cdd:TIGR02917 682 AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA 761

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 769 AVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEhHGKALEAIEKALQLKPKDPKVI 848
Cdd:TIGR02917 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELK-DPRALEYAERALKLAPNIPAIL 840

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1907173070 849 SelffTKGNQLREQNLLDKAFEgsyvsaraYYERALKLVPDSKLLKENLAK 899
Cdd:TIGR02917 841 D----TLGWLLVEKGEADRALP--------LLRKAVNIAPEAAAIRYHLAL 879
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 555-898 1.84e-23

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 107.09  E-value: 1.84e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 555 DQGRNKEAIYHYRTALKLYPRHASALNNLGT---LTKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLL 631
Cdd:TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAiylGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 632 KESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHV 711
Cdd:TIGR02917 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 712 AVVNLGRLYRSLGENSKAEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVM 790
Cdd:TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQpDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 791 GQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPKVI---SELFFTKGNQLREQNLLD- 866
Cdd:TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIklhRALLASGNTAEAVKTLEAw 762

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1907173070 867 ------KAF-----------EGSYVSARAYYERALKLVPDSKLLKENLA 898
Cdd:TIGR02917 763 lkthpnDAVlrtalaelylaQKDYDKAIKHYQTVVKKAPDNAVVLNNLA 811
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 588-709 1.51e-22

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 94.49  E-value: 1.51e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 588 KDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQA 667
Cdd:COG4783    18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEK 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1907173070 668 GIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSH 709
Cdd:COG4783    98 ALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 712-844 1.20e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 91.79  E-value: 1.20e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 712 AVVNLGRLYRSLGENSKAEEWYRRALKVART-AEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVM 790
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907173070 791 GQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKD 844
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 556-913 1.42e-21

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 100.93  E-value: 1.42e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 556 QGRNKEAIYHYRTALKLYPRHASALNNLGTLT---KDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLK 632
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLAlaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 633 ESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHnnYAVFLVD--SGFPEKAVAHYQQAIQLSPSHH 710
Cdd:TIGR02917 218 KAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAH--YLKALVDfqKKNYEDARETLQDALKSAPEYL 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 711 VAVVNLGRLYRSLGENSKAEEWYRRALK-----------------------------------VARTAEVLSPLGALYYN 755
Cdd:TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKyapnshqarrllasiqlrlgrvdeaiatlspalglDPDDPAALSLLGEAYLA 375

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 756 TGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIE 835
Cdd:TIGR02917 376 LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK 455

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 836 KALQLKPKDPKViselfftkgnqlreQNLLDKAF--EGSYVSARAYYERALKLVPDSKLLKENLAKLDRLERRLQEVRER 913
Cdd:TIGR02917 456 KLEKKQPDNASL--------------HNLLGAIYlgKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 695-854 2.96e-21

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 99.30  E-value: 2.96e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 695 AVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQ 773
Cdd:COG3914    63 AAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNpDNAEALFNLGNLLLALGRLEEALAALRRALALN 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 774 PSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPKVISELFF 853
Cdd:COG3914   143 PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLF 222


                  .
gi 1907173070 854 T 854
Cdd:COG3914   223 A 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 677-809 1.41e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 88.71  E-value: 1.41e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 677 DLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVART-AEVLSPLGALYYN 755
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLK 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907173070 756 TGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPR 809
Cdd:COG4783    85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 561-677 1.09e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 85.83  E-value: 1.09e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 561 EAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKY 637
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAylrLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1907173070 638 GPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSD 677
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 593-788 1.88e-19

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 88.55  E-value: 1.88e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 593 AKMYYQKALQLHPQHNRalfnlgnllksqektEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNC 672
Cdd:TIGR02521  31 AKIRVQLALGYLEQGDL---------------EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 673 PDSSDLHNNYAVFLVDSGFPEKAVAHYQQAI--QLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVART-AEVLSPL 749
Cdd:TIGR02521  96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIedPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQrPESLLEL 175

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1907173070 750 GALYYNTGRHKEA---LEVYREAVSLQPsqRELRLA--LAQVLA 788
Cdd:TIGR02521 176 AELYYLRGQYKDArayLERYQQTYNQTA--ESLWLGirIARALG 217
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 694-889 3.61e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 92.75  E-value: 3.61e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 694 KAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVLSPLGAL----------YYNTGRHKEAL 763
Cdd:COG3914    19 AAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLaallelaallLQALGRYEEAL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 764 EVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPK 843
Cdd:COG3914    99 ALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPD 178

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1907173070 844 DPKVISELfftkGNQLREQNLLDKAfegsyvsaRAYYERALKLVPD 889
Cdd:COG3914   179 NAEALNNL----GNALQDLGRLEEA--------IAAYRRALELDPD 212
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 529-641 1.63e-18

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 82.93  E-value: 1.63e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 529 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHP 605
Cdd:COG4783    24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAllkAGDYDEALALLEKALKLDP 103

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1907173070 606 QHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDF 641
Cdd:COG4783   104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 626-740 3.61e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 81.59  E-value: 3.61e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 626 EAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQL 705
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1907173070 706 SPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVA 740
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 527-890 4.00e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 89.76  E-value: 4.00e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 527 SRESLFRSGVQTLphnakvhynyanflkDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQL 603
Cdd:TIGR02917  21 SPEELIEAAKSYL---------------QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIylaLGDYAAAEKELRKALSL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 604 HPQHNRALFNLGNLLKSQEKTEEAIMLL--------KESIKY---------------------------GPDFADAYSSL 648
Cdd:TIGR02917  86 GYPKNQVLPLLARAYLLQGKFQQVLDELpgktllddEGAAELlalrglaylglgqlelaqksyeqalaiDPRSLYAKLGL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 649 ASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSK 728
Cdd:TIGR02917 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 729 AEEWYRRALKVARTaevlSPLGALY-----YNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHI 803
Cdd:TIGR02917 246 AEKHADALLKKAPN----SPLAHYLkalvdFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQI 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 804 VSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKAFEgsyvsaraYYERA 883
Cdd:TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLL----GEAYLALGDFEKAAE--------YLAKA 389


                  ....*..
gi 1907173070 884 LKLVPDS 890
Cdd:TIGR02917 390 TELDPEN 396
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 532-654 4.88e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 81.21  E-value: 4.88e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 532 FRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHPQHN 608
Cdd:COG4235     6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAllaAGDTEEAEELLERALALDPDNP 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1907173070 609 RALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYsSLASLLAE 654
Cdd:COG4235    86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR-LLEASIAE 130
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 592-707 7.84e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 80.44  E-value: 7.84e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 592 EAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKN 671
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1907173070 672 CPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSP 707
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
536-704 8.17e-18

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 83.43  E-value: 8.17e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 536 VQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLG---TLTKDMAEAKMYYQKALQLHPQHNRALF 612
Cdd:COG4785    66 ALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGlayLLLGDYDAALEDFDRALELDPDYAYAYL 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 613 NLGNLLKSQEKTEEAIMLLKESIKYGPDfaDAYSSLASLLAEQE-RFKEAEDiyqagikncpdssDLHNNYAVFLVDSGF 691
Cdd:COG4785   146 NRGIALYYLGRYELAIADLEKALELDPN--DPERALWLYLAERKlDPEKALA-------------LLLEDWATAYLLQGD 210

                         170
                  ....*....|...
gi 1907173070 692 PEKAVAHYQQAIQ 704
Cdd:COG4785   211 TEEARELFKLALA 223
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
562-771 1.30e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 82.66  E-value: 1.30e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 562 AIYHYRTALKLYPRHASALNNLGTLTKDMAEAKMYYQKAL--QLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGP 639
Cdd:COG4785    25 LLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDraLALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDP 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 640 DFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRL 719
Cdd:COG4785   105 DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLA 184

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1907173070 720 YRSLGENSKAEEWyrralkvartaevLSPLGALYYNTGRHKEALEVYREAVS 771
Cdd:COG4785   185 ERKLDPEKALALL-------------LEDWATAYLLQGDTEEARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 728-845 2.05e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 79.28  E-value: 2.05e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 728 KAEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSE 806
Cdd:COG4235     1 EAIARLRQALAANpNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1907173070 807 EPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDP 845
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 589-738 2.10e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 80.39  E-value: 2.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 589 DMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAG 668
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 669 IKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALK 738
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
588-674 5.02e-17

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 77.13  E-value: 5.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 588 KDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMlLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQA 667
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                  ....*..
gi 1907173070 668 GIKNCPD 674
Cdd:COG3063    85 ALELDPS 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
651-743 1.88e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 75.21  E-value: 1.88e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 651 LLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAhYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAE 730
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|...
gi 1907173070 731 EWYRRALKVARTA 743
Cdd:COG3063    80 AYLERALELDPSA 92
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
555-640 5.24e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 74.05  E-value: 5.24e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 555 DQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMyYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLL 631
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLlleQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82


                  ....*....
gi 1907173070 632 KESIKYGPD 640
Cdd:COG3063    83 ERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 660-786 9.23e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 74.66  E-value: 9.23e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 660 EAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKV 739
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1907173070 740 A-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQV 786
Cdd:COG4235    81 DpDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 543-673 1.36e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 75.00  E-value: 1.36e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 543 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQE 622
Cdd:COG5010    23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1907173070 623 KTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCP 673
Cdd:COG5010   103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
690-778 1.80e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 72.51  E-value: 1.80e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 690 GFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEwYRRALKVART-AEVLSPLGALYYNTGRHKEALEVYRE 768
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNnAEALLNLAELLLELGDYDEALAYLER 84

                          90
                  ....*....|
gi 1907173070 769 AVSLQPSQRE 778
Cdd:COG3063    85 ALELDPSALR 94
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 529-658 5.24e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.27  E-value: 5.24e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 529 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTKDM---AEAKMYYQKALQLHP 605
Cdd:COG3914   132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLgrlEEAIAAYRRALELDP 211

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907173070 606 QHNRALFNLGNLLKSQ------EKTEEAIMLLKESIKYGPDFADAYS---SLASLLAEQERF 658
Cdd:COG3914   212 DNADAHSNLLFALRQAcdwevyDRFEELLAALARGPSELSPFALLYLpddDPAELLALARAW 273
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 569-707 2.18e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 71.53  E-value: 2.18e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 569 ALKLYPRHASALNNLGTLTKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSL 648
Cdd:COG5010    15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907173070 649 ASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSP 707
Cdd:COG5010    95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 589-840 5.79e-14

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 73.82  E-value: 5.79e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 589 DMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPD-FADAYSSLASLLAEqerfKEAEDIYQA 667
Cdd:cd24142    15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSGG----EEALQYYEK 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 668 GIKNCpdssdlhnnyavflvdsgfpEKAVAHYQQAIQLSPSHHVAVVN-LGRLYRSLGE------------NSKAEEWYR 734
Cdd:cd24142    91 GIEIL--------------------EEELQALQAASAEAEEEAEELKRkLSSALCALAEiymtdlcdepdaEQRCEELIT 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 735 RALKVART-AEVLSPLGALYYNTGRHKEALEVYREAVSL---------------------QPSqRELRLALAQVLAVMGQ 792
Cdd:cd24142   151 KALELDPTnPEALQTLASLRISQQRPDEAKEALRRSLELwkdlkeedeeeaeedeaeeedVPS-YEFRISLAKLLIELEM 229

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907173070 793 TKEAEKITSHIVSEEPRCLE-------CYRLLS--AIHSKQEHHGKALEAIEKALQL 840
Cdd:cd24142   230 YEEALEVLEQLLDEDDEDVEvwyllgwAYYLLGekEQEEAAELLRDARELLEKALKL 286
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 555-913 9.36e-14

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 75.89  E-value: 9.36e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  555 DQGRNKEAIYHYRTALKLYPRHASALNNLG---TLTKDMAEAKMYYQKALQLHPQHnralFNLGNLlKSQEKTEEAIMLL 631
Cdd:PRK11447   281 DSGQGGKAIPELQQAVRANPKDSEALGALGqaySQQGDRARAVAQFEKALALDPHS----SNRDKW-ESLLKVNRYWLLI 355

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  632 KEsikygpdfADAysslaSLLAEQERfkEAEDIYQAGIKNCPDSSdlhnnYAVF-LVDSGFPEK----AVAHYQQAIQLS 706
Cdd:PRK11447   356 QQ--------GDA-----ALKANNLA--QAERLYQQARQVDNTDS-----YAVLgLGDVAMARKdyaaAERYYQQALRMD 415

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  707 PSHHVAVVNLGRLYRSLGENsKAEEWY--------------RRALKVAR---TAEVLSplgalyyNTGRHKEALEVYREA 769
Cdd:PRK11447   416 PGNTNAVRGLANLYRQQSPE-KALAFIaslsasqrrsiddiERSLQNDRlaqQAEALE-------NQGKWAQAAELQRQR 487

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  770 VSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLE---CYRLLSAIHSKQEHHGKALEAIEKAlQLKPK--- 843
Cdd:PRK11447   488 LALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEqvyAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNiqe 566

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  844 -DPKVISELFFTKGNQLREQN---------------------LLDKAFE-GSYVSARAYYERALKLVPDSKLLKENLAKL 900
Cdd:PRK11447   567 lAQRLQSDQVLETANRLRDSGkeaeaeallrqqppstridltLADWAQQrGDYAAARAAYQRVLTREPGNADARLGLIEV 646

                          410
                   ....*....|...
gi 1907173070  901 DRLERRLQEVRER 913
Cdd:PRK11447   647 DIAQGDLAAARAQ 659
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
719-812 1.41e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 67.12  E-value: 1.41e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 719 LYRSLGENSKAEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEvYREAVSLQPSQRELRLALAQVLAVMGQTKEAE 797
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....*
gi 1907173070 798 KITSHIVSEEPRCLE 812
Cdd:COG3063    80 AYLERALELDPSALR 94
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
617-710 2.13e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 66.73  E-value: 2.13e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 617 LLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDiYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAV 696
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....
gi 1907173070 697 AHYQQAIQLSPSHH 710
Cdd:COG3063    80 AYLERALELDPSAL 93
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 550-774 6.08e-13

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 70.71  E-value: 6.08e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 550 ANFLKDQGRNKEAIYHYRTALKLYPRHASALnnlgtltkdmaeaKMYYQKALQLHpQHNRALFNLGNLLKSQEKTEEAIM 629
Cdd:COG3071    92 AELLLDQGQAEQALATLEALRAGAPRHPQVL-------------RLLLQAYRQLG-DWEELLELLPALRKHKALSAEEAQ 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 630 LLKE--------------------------SIKYGPDFADAYsslASLLAEQERFKEAEDIYQAGIKNCPDSsDLHNNYA 683
Cdd:COG3071   158 ALERraylgllrqaardaealkalwkalprAERRDPELAAAY---ARALIALGDHDEAERLLREALKRQWDP-RLVRLYG 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 684 vfLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVLSPLGALYYNTGRHKEAL 763
Cdd:COG3071   234 --RLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAA 311

                         250
                  ....*....|.
gi 1907173070 764 EVYREAVSLQP 774
Cdd:COG3071   312 EHYRKALALAL 322
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
529-605 6.34e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 65.19  E-value: 6.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 529 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIyHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHP 605
Cdd:COG3063    12 EEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELlleLGDYDEALAYLERALELDP 90
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 540-666 2.70e-12

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 67.36  E-value: 2.70e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 540 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKAL--QLHPQHNRALFNL 614
Cdd:TIGR02521  62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFlcqQGKYEQAMQQFEQAIedPLYPQPARSLENA 141

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1907173070 615 GNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQ 666
Cdd:TIGR02521 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 691-842 8.32e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 64.21  E-value: 8.32e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 691 FPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVLSPLGALYYNTGRHKEALEVYREAV 770
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907173070 771 SLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKP 842
Cdd:COG5010    82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 529-605 1.01e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.83  E-value: 1.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 529 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TKDMAEAKMYYQKALQLHP 605
Cdd:COG5010    74 LALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALllsLGQDDEAKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 712-912 1.48e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 68.10  E-value: 1.48e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 712 AVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVLSPLGALYYntgrhkEALEVYREAVSLQPSQRELRLALAQVLAVMG 791
Cdd:COG3914    19 AAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLA------LAAGEAAAAAAALLLLAALLELAALLLQALG 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 792 QTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFeg 871
Cdd:COG3914    93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFA----EAYLNLGEALRRLGRLEEAI-- 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1907173070 872 syvsarAYYERALKLVPDSKLLKENLAKLDRLERRLQEVRE 912
Cdd:COG3914   167 ------AALRRALELDPDNAEALNNLGNALQDLGRLEEAIA 201
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 647-851 4.09e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 64.96  E-value: 4.09e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 647 SLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSH-HVAVVNLGRLyrSLGE 725
Cdd:cd24142     5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGGE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 726 NskAEEWYRRALKVARtaevlsplgalyyntgRHKEALEvyREAVSLQPSQRELRLALAQVLAVMG---QT-----KEAE 797
Cdd:cd24142    83 E--ALQYYEKGIEILE----------------EELQALQ--AASAEAEEEAEELKRKLSSALCALAeiyMTdlcdePDAE 142

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 798 K-----ITSHIvSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQL-KPKDPKVISEL 851
Cdd:cd24142   143 QrceelITKAL-ELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEA 201
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 592-862 4.22e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.55  E-value: 4.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 592 EAKMYYQKAL---QLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAG 668
Cdd:TIGR00990 312 EAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 669 IKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALK-VARTAEVLS 747
Cdd:TIGR00990 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKnFPEAPDVYN 471

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 748 PLGALYYNTGRHKEALEVYREAVSLQpsqRELRLALAQVLAVMG------QTK----EAEKITSHIVSEEPRCLECYRLL 817
Cdd:TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELE---KETKPMYMNVLPLINkalalfQWKqdfiEAENLCEKALIIDPECDIAVATM 548

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1907173070 818 SAIHSKQEHHGKALEAIEKALQLKPKDPKVISELFFTKGNQLREQ 862
Cdd:TIGR00990 549 AQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQ 593
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 775-913 5.84e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 5.84e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 775 SQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPkvisELFFT 854
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP----EARLN 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907173070 855 KGNQLREQNLLDKAfegsyvsaRAYYERALKLVPDSKLLKENLAKLDRLERRLQEVRER 913
Cdd:COG4783    78 LGLALLKAGDYDEA--------LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA 128
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 549-890 9.47e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 65.39  E-value: 9.47e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 549 YANFLKDQG----RNKE---AIYHYRTALKL------YPRHASALNNLGTLTKDMAEAKmyyqKALQLHPQHNRALFNLG 615
Cdd:TIGR00990 126 YAAKLKEKGnkayRNKDfnkAIKLYSKAIECkpdpvyYSNRAACHNALGDWEKVVEDTT----AALELDPDYSKALNRRA 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 616 NLLKSQEKTEEAIMLLKESIKYGpDFADAYSS--LASLLAEQERFKeAEDIYQAGIKNCPDSSDLHNNYAVFLvdsgfPE 693
Cdd:TIGR00990 202 NAYDGLGKYADALLDLTASCIID-GFRNEQSAqaVERLLKKFAESK-AKEILETKPENLPSVTFVGNYLQSFR-----PK 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 694 KAVAHYQQAIQLSPSHHVAVVNLGRlyRSLgeNSKAEEWYRRALKVARTAEVLSPLGAlyyntgrhkealevyREAVSLq 773
Cdd:TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGL--KSP--ESKADESYEEAARAFEKALDLGKLGE---------------KEAIAL- 334

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 774 psqrELRlALAQVLavMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPKVI---SE 850
Cdd:TIGR00990 335 ----NLR-GTFKCL--KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYyhrAQ 407

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907173070 851 LFFTKGNQLREQNLLDKAFE-------------------GSYVSARAYYERALKLVPDS 890
Cdd:TIGR00990 408 LHFIKGEFAQAGKDYQKSIDldpdfifshiqlgvtqykeGSIASSMATFRRCKKNFPEA 466
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 540-798 1.17e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 65.39  E-value: 1.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 540 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTKDMA---EAKMYYQKALQLHPQHNRALFNLGN 616
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGdpdKAEEDFDKALKLNSEDPDIYYHRAQ 407

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 617 LLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAV 696
Cdd:TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 697 AHYQQAIQLSPSHHVAVVNLG-------RLYRSLGENSKAEEWYRRALKV-ARTAEVLSPLGALYYNTGRHKEALEVYRE 768
Cdd:TIGR00990 488 EKFDTAIELEKETKPMYMNVLplinkalALFQWKQDFIEAENLCEKALIIdPECDIAVATMAQLLLQQGDVDEALKLFER 567

                         250       260       270
                  ....*....|....*....|....*....|
gi 1907173070 769 AVSLQPSQRELRLALAQVLAVMGQTKEAEK 798
Cdd:TIGR00990 568 AAELARTEGELVQAISYAEATRTQIQVQED 597
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
752-843 1.36e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 58.64  E-value: 1.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 752 LYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITsHIVSEEPRCLECYRLLSAIHSKQEHHGKAL 831
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1907173070 832 EAIEKALQLKPK 843
Cdd:COG3063    80 AYLERALELDPS 91
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 555-651 1.87e-10

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 58.85  E-value: 1.87e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 555 DQGRNKEAIYHYRTALKLYPRH---ASALNNLGTL---TKDMAEAKMYYQKALQLHPQHNR---ALFNLGNLLKSQEKTE 625
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAyyaLGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYD 84

                          90       100
                  ....*....|....*....|....*.
gi 1907173070 626 EAIMLLKESIKYGPDFADAYSSLASL 651
Cdd:COG1729    85 KARATLEELIKKYPDSEAAKEARARL 110
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
610-885 4.51e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 60.70  E-value: 4.51e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 610 ALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNcPDSSDLHNNYAVFLVDS 689
Cdd:COG4785     8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 690 GFPEKAVAHYQQAIQLSPSHhvavvnlgrlyrslgenskAEEWYRRalkvartaevlsplGALYYNTGRHKEALEVYREA 769
Cdd:COG4785    87 GDYDLAIADFDQALELDPDL-------------------AEAYNNR--------------GLAYLLLGDYDAALEDFDRA 133

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 770 VSLQPSQRELRLALAQVLAVMGQTKEAEkitshivseeprclecyrllsaihskqehhgkalEAIEKALQLKPKDPKVIS 849
Cdd:COG4785   134 LELDPDYAYAYLNRGIALYYLGRYELAI----------------------------------ADLEKALELDPNDPERAL 179

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1907173070 850 ELFFTKGNQLREQ--NLLDKAF------EGSYVSARAYYERALK 885
Cdd:COG4785   180 WLYLAERKLDPEKalALLLEDWatayllQGDTEEARELFKLALA 223
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 686-908 3.64e-09

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 59.15  E-value: 3.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 686 LVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGEnskaeewYRRALKVARTAEVLSPLGALYYNTGRHKEALEV 765
Cdd:COG3071    95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGD-------WEELLELLPALRKHKALSAEEAQALERRAYLGL 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 766 YREAV-----------SLQPSQR---ELRLALAQVLAVMGQTKEAEKITSHIVSEEPRcLECYRLLSAIHSKQEHhgKAL 831
Cdd:COG3071   168 LRQAArdaealkalwkALPRAERrdpELAAAYARALIALGDHDEAERLLREALKRQWD-PRLVRLYGRLQGGDPA--KQL 244

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 832 EAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKafegsyvsARAYYERALKLVPDSK---LLKENLAKLDRLERRLQ 908
Cdd:COG3071   245 KRAEKWLKKHPNDP----DLLLALGRLCLRNQLWGK--------AREYLEAALALRPSAEayaELARLLEQLGDPEEAAE 312
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 758-912 1.45e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.97  E-value: 1.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 758 RHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKA 837
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907173070 838 LQLKPKDPKVISELfftkGNQLREQNLLDKafegsyvsARAYYERALKLVPDSKLLKENLAKLDRLERRLQEVRE 912
Cdd:COG5010    81 LQLDPNNPELYYNL----ALLYSRSGDKDE--------AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
TPR_12 pfam13424
Tetratricopeptide repeat;
714-775 1.66e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.39  E-value: 1.66e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907173070 714 VNLGRLYRSLGENSKAEEWYRRALKVAR---------TAEVLSPLGALYYNTGRHKEALEVYREAVSLQPS 775
Cdd:pfam13424   7 NNLAAVLRRLGRYDEALELLEKALEIARrllgpdhplTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 686-785 1.66e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 53.46  E-value: 1.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 686 LVDSGFPEKAVAHYQQAIQLSPSHHV---AVVNLGRLYRSLGENSKAEEWYRRALKV----ARTAEVLSPLGALYYNTGR 758
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRypdsPKAPDALLKLGLSYLELGD 82

                          90       100
                  ....*....|....*....|....*..
gi 1907173070 759 HKEALEVYREAVSLQPSQRELRLALAQ 785
Cdd:COG1729    83 YDKARATLEELIKKYPDSEAAKEARAR 109
TPR_19 pfam14559
Tetratricopeptide repeat;
757-820 2.08e-08

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 51.43  E-value: 2.08e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907173070 757 GRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAI 820
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR COG0790
TPR repeat [General function prediction only];
566-740 3.08e-08

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 55.70  E-value: 3.08e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 566 YRTALKLYPR-----HASALNNLGTL-------TKDMAEAKMYYQKALQLhpQHNRALFNLGNLLKSQEKTE----EAIM 629
Cdd:COG0790    83 YEKALEWFEKaaeqgDAEAQYNLGLMyeeglgvPQDYAKALEWYEKAAEQ--GDADAQYNLGLLYLNGEGVPkdpaKAAE 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 630 LLKESIKYGpdFADAYSSLASLlaeqerfkeaediYQAGIKNCPDssdlhnnyavflvdsgfPEKAVAHYQQAIQLspSH 709
Cdd:COG0790   161 WYRKAAEQG--DADAQYNLGVL-------------YENGRGVPKD-----------------PAKALEWYRKAAEQ--GD 206

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1907173070 710 HVAVVNLGRLYRSlGE-----NSKAEEWYRRALKVA 740
Cdd:COG0790   207 ADAQYNLGRLYLN-GEgvekdLEKALRWLRKAAEQA 241
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 689-840 3.43e-08

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 56.55  E-value: 3.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 689 SGFPEKAVAHYQQAIQLSPS--HH---VAVVNLGRLYRSLGENSKAEEWYRRALKVAR-------TAEVLSPLGALYYNT 756
Cdd:pfam17874  14 KGDAERALELAEQALALLPEddLLargLATFVLGEAYLCLGDLDAALQAMREAEALARradsphvTLWALLQQGEILRAQ 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 757 GRHKEALEVYREAVSLQPSQRELRL--------ALAQVLAVMGQTKEAE-------KITSHIvsEEPRCLECYRLLSAIH 821
Cdd:pfam17874  94 GRLHQALETYQQALQLARDHGLQHLplhgfllvGLADLLYEWNDLEEAEqhaqqgiQLGRQW--EPDAAVDAYVLLARIA 171

                         170
                  ....*....|....*....
gi 1907173070 822 SKQEHHGKALEAIEKALQL 840
Cdd:pfam17874 172 LAQGELEEALTLLRRAELL 190
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 592-840 4.59e-08

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 56.17  E-value: 4.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 592 EAKMYYQKALQLHP--QHNR---ALFNLG-------NLLKSQEKTEEAIMLLKeSIKYGPDFADAYSSLASLLAEQERFK 659
Cdd:pfam17874  19 RALELAEQALALLPedDLLArglATFVLGeaylclgDLDAALQAMREAEALAR-RADSPHVTLWALLQQGEILRAQGRLH 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 660 EAEDIYQAGIKNCPDSS--------DLHNNYAVFLVDSGFPEKAVAHYQQAIQL----SPSHHV-AVVNLGRLYRSLGEN 726
Cdd:pfam17874  98 QALETYQQALQLARDHGlqhlplhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLgrqwEPDAAVdAYVLLARIALAQGEL 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 727 SKAEEWYRRALKVARTAEVLSPLGA-------LYYNTGRHKEALEVYREAvSLQPS-------QRELRLaLAQVLAVMGQ 792
Cdd:pfam17874 178 EEALTLLRRAELLARQSFFHVDWLAnaervrvRLWLARGDLRAAVRWLRA-AEPPSdadnhflERELRN-LARVLLALGR 255

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907173070 793 TKEAEKITSHIVS---EEPRCLECYR---LLSAIHSKQEHHGKALEAIEKALQL 840
Cdd:pfam17874 256 FDDALSLLERLQNlaeQLGRVRSLIEnliLQALALLALGRPDEALQALLDALSL 309
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 804-900 5.62e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 5.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 804 VSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPKVIS---ELFFTKGNQLREQNLLDKAFE---------- 870
Cdd:COG4235    10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLdlaEALLAAGDTEEAEELLERALAldpdnpealy 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1907173070 871 ---------GSYVSARAYYERALKLVPDS---KLLKENLAKL 900
Cdd:COG4235    90 llglaafqqGDYAEAIAAWQKLLALLPADapaRLLEASIAEA 131
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
640-771 7.75e-08

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 54.50  E-value: 7.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 640 DFADAYSS---LASLLAEQERFKEAEDIYQAGIK-NCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSH-----H 710
Cdd:COG4700    84 EFADTVQNrvrLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFkssdaH 163

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907173070 711 VAvvnLGRLYRSLGENSKAEEWYRRALKVARTAEVLSPLGALYYNTGRHKEALEVYREAVS 771
Cdd:COG4700   164 LL---YARALEALGDLEAAEAELEALARRYSGPEARYRYAKFLARQGRTAEAKELLEEILD 221
pgaA PRK10049
outer membrane protein PgaA; Provisional
 732-864 1.23e-07

outer membrane protein PgaA; Provisional


Pssm-ID: 236644 [Multi-domain]  Cd Length: 765  Bit Score: 55.49  E-value: 1.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 732 WYRRALKVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCL 811
Cdd:PRK10049   38 YNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKA 117

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907173070 812 EcYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPKVISELFFT-KGNQLREQNL 864
Cdd:PRK10049  118 N-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAlRNNRLSAPAL 170
TPR_12 pfam13424
Tetratricopeptide repeat;
674-741 1.37e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 49.69  E-value: 1.37e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907173070 674 DSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLS----PSHHVAVV----NLGRLYRSLGENSKAEEWYRRALKVAR 741
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllGPDHPLTAttllNLGRLYLELGRYEEALELLERALALAE 76
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 541-674 1.86e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 54.15  E-value: 1.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 541 HNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPrHASALNNLGTL-TKDMAEAKMYYQKALQLHPQHNRALFNLGNLLK 619
Cdd:COG3071   191 RDPELAAAYARALIALGDHDEAERLLREALKRQW-DPRLVRLYGRLqGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCL 269

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907173070 620 SQEKTEEAIMLLKESIKYGPDfADAYSSLASLLAEQERFKEAEDIYQAGIKNCPD 674
Cdd:COG3071   270 RNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 527-634 4.05e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 53.83  E-value: 4.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 527 SRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKL-------YPRHASALNNLGTLTK---DMAEAKMY 596
Cdd:TIGR00990 451 SSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELeketkpmYMNVLPLINKALALFQwkqDFIEAENL 530

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1907173070 597 YQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKES 634
Cdd:TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568
TPR_15 pfam13429
Tetratricopeptide repeat;
614-845 8.18e-07

Tetratricopeptide repeat;


Pssm-ID: 433199 [Multi-domain]  Cd Length: 279  Bit Score: 51.59  E-value: 8.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 614 LGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLA-----EQERFKEAEDIYQAGIKNCPDSSDLhnnyaVFLVD 688
Cdd:pfam13429  14 LATLLYGQGDPRKALAALKEGAQTAPASDTEFWRTLADLAwalqqDDDARRAYRQLLASGKARADDYERL-----ILLLY 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 689 SGFPEKAVA-------------HYQQAIQLSPSHHvAVVNLGRLYRSLGENSKAEewyrralkvaRTAEVLSPLGALYYN 755
Cdd:pfam13429  89 DARPKDAARlselgwrrfrsprHLYSALYLYERAG-DYDRLARLLASLEELPAAE----------QSPAFWLARAEYYRQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 756 TGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIE 835
Cdd:pfam13429 158 TGEPDAALRDYRRALALAPASTELRAALLWFLIDLGRRAELRPALAAWRARAETDADLWGPLAAAYLRLGRPRKALPYLR 237

                         250
                  ....*....|
gi 1907173070 836 KALQLKPKDP 845
Cdd:pfam13429 238 KQAASNRNDP 247
HemYx COG3898
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ...
 624-845 1.05e-06

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];


Pssm-ID: 443105 [Multi-domain]  Cd Length: 468  Bit Score: 52.20  E-value: 1.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 624 TEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNY-AVFL------VDSGFPEKAV 696
Cdd:COG3898   168 TEAALALAEEALALAPKLPWAQDALLELQAAAGDWDGALATLDAALKAGLLDKDVARRRrAVLLtarareLEEGDPDEAR 247

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 697 AHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEewyrralKVARTAEVLSPlgalyyntgrHKEALEVYREA------- 769
Cdd:COG3898   248 ELAIEALKLAPDLVPAAVLAARLLIAQGKLRKAA-------KVLEKAWRAQP----------HPDLAAAYAELrpgdsal 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 770 ---------VSLQPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECyRLLSAIHSKQE-HHGKALEAIEKALQ 839
Cdd:COG3898   311 drlkraetlAALNPDHPESRLALAEAALAAGDFGEARRALGPLLEERPTARVC-LLMAEIERGEHgDDGRVREWLARALR 389


                  ....*.
gi 1907173070 840 LkPKDP 845
Cdd:COG3898   390 A-PRDP 394
TPR_12 pfam13424
Tetratricopeptide repeat;
577-636 1.51e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.61  E-value: 1.51e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907173070 577 ASALNNLGTL---TKDMAEAKMYYQKALQL--------HPQHNRALFNLGNLLKSQEKTEEAIMLLKESIK 636
Cdd:pfam13424   3 ATALNNLAAVlrrLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 529-610 1.53e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 47.68  E-value: 1.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 529 ESLFRSGVQTLPHN---AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRH---ASALNNLGTL---TKDMAEAKMYYQK 599
Cdd:COG1729    13 IAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSyleLGDYDKARATLEE 92

                          90
                  ....*....|.
gi 1907173070 600 ALQLHPQHNRA 610
Cdd:COG1729    93 LIKKYPDSEAA 103
TPR_12 pfam13424
Tetratricopeptide repeat;
543-606 1.63e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.61  E-value: 1.63e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907173070 543 AKVHYNYANFLKDQGRNKEAIYHYRTALKLY--------PRHASALNNLGTL---TKDMAEAKMYYQKALQLHPQ 606
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLyleLGRYEEALELLERALALAEK 77
TPR_hemY_coli TIGR00540
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ...
 556-769 1.78e-06

heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]


Pssm-ID: 273126 [Multi-domain]  Cd Length: 367  Bit Score: 51.13  E-value: 1.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 556 QGRNKEAIyhyRTALKLYpRHASALNNLGTLTKDMAEAKMyyqkalqLHPQHNRALFNLGNLLKSQEKTEEAIMLLKE-- 633
Cdd:TIGR00540 164 APRHTAVL---RLALRAY-QRSGNWDALLKLLPALRKAKA-------LSPEEAARLEQQAYIGLLDEAREEDADALKTww 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 634 -----SIKYGPDFADAYsslASLLAEQERFKEAEDIYQAGIKNCPDSsDLHNNYAvfLVDSGFPEKAVAHYQQAIQLSPS 708
Cdd:TIGR00540 233 kqlprAERQEPELAVAA---AEALIQLGDHDEAEKLIEEALKKEWDP-ELLRLYG--RLQPGDPSPLIKRAEKWLKKHPD 306

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907173070 709 HHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVLSPLGALYYNTGRHKEALEVYREA 769
Cdd:TIGR00540 307 DALLLLALGRLCLRQQLWGKAQSYLEASLSLAPTEEAHLELAQLFEQLGDTEAAAQHYRKS 367
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
820-912 1.87e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 1.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 820 IHSKQEHHGKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKAFEgsyvsarayYERALKLVPDSKLLKENLAK 899
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL----GLLLLEQGRYDEAIA---------LEKALKLDPNNAEALLNLAE 67

                          90
                  ....*....|...
gi 1907173070 900 LDRLERRLQEVRE 912
Cdd:COG3063    68 LLLELGDYDEALA 80
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 609-721 1.99e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 47.29  E-value: 1.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 609 RALFNLGNLlksqektEEAIMLLKESIKYGPD---FADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSS---DLHNNY 682
Cdd:COG1729     1 KALLKAGDY-------DEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKL 73

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1907173070 683 AVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYR 721
Cdd:COG1729    74 GLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLAR 112
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 719-808 2.01e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 47.29  E-value: 2.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 719 LYRSlGENSKAEEWYRRALKV----ARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQR---ELRLALAQVLAVMG 791
Cdd:COG1729     3 LLKA-GDYDEAIAAFKAFLKRypnsPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELG 81

                          90
                  ....*....|....*..
gi 1907173070 792 QTKEAEKITSHIVSEEP 808
Cdd:COG1729    82 DYDKARATLEELIKKYP 98
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 753-899 4.10e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 48.13  E-value: 4.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 753 YY-------NTGRHKEALEVYREAVSLQ--PSQRelrlalAQVLAVMGqtkeaekitshivseeprclecyrllsAIHSK 823
Cdd:PRK02603   38 YYrdgmsaqADGEYAEALENYEEALKLEedPNDR------SYILYNMG---------------------------IIYAS 84

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907173070 824 QEHHGKALEAIEKALQLKPKDP---KVISELFFTKGNQLREQNLLDKAfEGSYVSARAYYERALKLVPDSKLLKENLAK 899
Cdd:PRK02603   85 NGEHDKALEYYHQALELNPKQPsalNNIAVIYHKRGEKAEEAGDQDEA-EALFDKAAEYWKQAIRLAPNNYIEAQNWLK 162
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
546-667 4.39e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 49.11  E-value: 4.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 546 HYNYANFLKDQGRNKEAIYHYRTALK-LYPRHASALNNLG---TLTKDMAEAKMYYQKALQLHPQHNR--ALFNLGNLLK 619
Cdd:COG4700    92 RVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAqalFELGRYAEALETLEKLIAKNPDFKSsdAHLLYARALE 171

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1907173070 620 SQEKTEEAIMLLKESIKYGPDFAdAYSSLASLLAEQERFKEAEDIYQA 667
Cdd:COG4700   172 ALGDLEAAEAELEALARRYSGPE-ARYRYAKFLARQGRTAEAKELLEE 218
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 658-766 1.03e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 46.97  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 658 FKEAEDIYQAGIK---NCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSK------ 728
Cdd:PRK02603   51 YAEALENYEEALKleeDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEeagdqd 130

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1907173070 729 -AEEWYRRALKVARTAEVLSPLGAL-----YYNTGRHKeaLEVY 766
Cdd:PRK02603  131 eAEALFDKAAEYWKQAIRLAPNNYIeaqnwLKTTGRSN--IDVY 172
TPR_19 pfam14559
Tetratricopeptide repeat;
621-683 2.36e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 42.96  E-value: 2.36e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907173070 621 QEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYA 683
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 505-633 3.69e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.77  E-value: 3.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 505 ASTVLLL---LLFSWKT---VKQNEIWLSREslfrsgvqtlPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHAS 578
Cdd:TIGR02917 736 SQNAIKLhraLLASGNTaeaVKTLEAWLKTH----------PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAV 805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 579 ALNNL---------------------------------GTL---TKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQE 622
Cdd:TIGR02917 806 VLNNLawlylelkdpraleyaeralklapnipaildtlGWLlveKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885

                         170
                  ....*....|.
gi 1907173070 623 KTEEAIMLLKE 633
Cdd:TIGR02917 886 RKAEARKELDK 896
TPR_19 pfam14559
Tetratricopeptide repeat;
588-651 5.14e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 41.80  E-value: 5.14e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907173070 588 KDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASL 651
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 602-815 7.11e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 46.84  E-value: 7.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 602 QLHPQHNRALFNLGNLLKSQEKTEEAIML-------LKESIKYGPDFAD---AYSSLASLLAEQERFKEA----EDIYQA 667
Cdd:NF040586  428 PDDRQTLRLRFHLANALRSLGRYEEARELdedtlerQRRVLGLGEDHPHtlmTAGGLGADLRALGRFREAleldEETLER 507

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 668 ----GIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQ-----LSPSHH---VAVVNLGRLYRSLGENSKA----EE 731
Cdd:NF040586  508 hrrvFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRrrrrvLGPDHPrtlLSANNLARDLRELGRYAEAldllEE 587

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 732 WYRRALKVARTAEVLSPLGAL------YYNTGRHKEALE----VYREAVSLQPSQRELRLA----LAQVLAVMGQTKEAE 797
Cdd:NF040586  588 ALERYREVLGGPDHPDTLRAAkslavaLRRAGRLEEALElaedTYERYRRRFGPDHPDTLAaalsLANDLRALGDADEAR 667

                         250
                  ....*....|....*...
gi 1907173070 798 KITShivseepRCLECYR 815
Cdd:NF040586  668 ELAR-------EVLDRYR 678
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 612-676 7.92e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.55  E-value: 7.92e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907173070 612 FNLGNLLKSQEKTEEAIMLLKESIKYG---PDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSS 676
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 556-889 8.18e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 45.67  E-value: 8.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 556 QGRNKEAIYHYRTALKLYPRHASAlnnlgtltKDMAEAKMY-----YQKAL-------QLHPQHNRALFNLGNLLKSQEK 623
Cdd:COG3071    63 LGDYERRDEYLAQALELAPEAELA--------VLLTRAELLldqgqAEQALatlealrAGAPRHPQVLRLLLQAYRQLGD 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 624 TEEAIMLLKESIKYGPDFADAYSSLAsLLAEQERFKEAediyqagiknCPDSSDLHNNYavflvdSGFPEKavahyqqaI 703
Cdd:COG3071   135 WEELLELLPALRKHKALSAEEAQALE-RRAYLGLLRQA----------ARDAEALKALW------KALPRA--------E 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 704 QLSPShhvAVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVLSPLGALyyNTGRHKEALEVYREAVSLQPSQRELRLAL 783
Cdd:COG3071   190 RRDPE---LAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYGRL--QGGDPAKQLKRAEKWLKKHPNDPDLLLAL 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 784 AQVlavmgqtkeaekitshivseeprcleCYRllsaihskQEHHGKALEAIEKALQLKPkDPKVISELfftkgnqlreQN 863
Cdd:COG3071   265 GRL--------------------------CLR--------NQLWGKAREYLEAALALRP-SAEAYAEL----------AR 299

                         330       340
                  ....*....|....*....|....*.
gi 1907173070 864 LLDKafEGSYVSARAYYERALKLVPD 889
Cdd:COG3071   300 LLEQ--LGDPEEAAEHYRKALALALG 323
TPR_12 pfam13424
Tetratricopeptide repeat;
742-843 1.10e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.22  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 742 TAEVLSPLGALYYNTGRHKEALEVYREAvslqpsqrelrlalaqvLAVMGQTKEAEKitshivseePRCLECYRLLSAIH 821
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKA-----------------LEIARRLLGPDH---------PLTATTLLNLGRLY 55

                          90       100
                  ....*....|....*....|..
gi 1907173070 822 SKQEHHGKALEAIEKALQLKPK 843
Cdd:pfam13424  56 LELGRYEEALELLERALALAEK 77
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 686-744 1.62e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 40.78  E-value: 1.62e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907173070 686 LVDSGFPEKAVAHYQQAIQL---SPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTAE 744
Cdd:pfam13432   7 ALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_11 pfam13414
TPR repeat;
615-655 1.84e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.76  E-value: 1.84e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1907173070 615 GNLLKSQEKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQ 655
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
TPR_14 pfam13428
Tetratricopeptide repeat;
749-786 1.91e-04

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 39.71  E-value: 1.91e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1907173070 749 LGALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQV 786
Cdd:pfam13428   7 LARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
TPR_11 pfam13414
TPR repeat;
550-584 2.05e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.38  E-value: 2.05e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1907173070 550 ANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLG 584
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLG 35
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 543-575 2.28e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.04  E-value: 2.28e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1907173070 543 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPR 575
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 692-798 2.60e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 44.41  E-value: 2.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 692 PEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALK--VARTAEVLSPLGALYYNTGRHKEALEVYREA 769
Cdd:PRK11788  196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEqdPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275

                          90       100
                  ....*....|....*....|....*....
gi 1907173070 770 VSLQPSQrELRLALAQVLAVMGQTKEAEK 798
Cdd:PRK11788  276 LEEYPGA-DLLLALAQLLEEQEGPEAAQA 303
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 642-783 2.63e-04

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 43.31  E-value: 2.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 642 ADAYSSLASLLAEQERfKEAEDIYQAGIKNCPDSSdlhnnYAVF--------LVDSGFPEKAVAHYQQAIQLSPSHHV-A 712
Cdd:COG2976    54 SALYEQLLEALAAGDA-AAAAAAAEKLIDDYGGTA-----YAALaalllakaAVDAGDLDKAAAQLQWVLDNAKDPALkA 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 713 VVNLgRLYRSLGENSKAEEwyrrALKV----------ARTAEVLsplGALYYNTGRHKEALEVYREAVSLQPSQRELRLA 782
Cdd:COG2976   128 LARL-RLARVLLAQKKYDE----ALATldavkpeafaALYAELR---GDILLAQGDKAEARAAYQKALAALPEDAPLRQL 199


                  .
gi 1907173070 783 L 783
Cdd:COG2976   200 L 200
TPR COG0790
TPR repeat [General function prediction only];
542-636 3.78e-04

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 42.99  E-value: 3.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 542 NAKVHYNYANFLKDqGRN-----KEAIYHYRTALKLypRHASALNNLGTL-------TKDMAEAKMYYQKALQLhpQHNR 609
Cdd:COG0790   134 DADAQYNLGLLYLN-GEGvpkdpAKAAEWYRKAAEQ--GDADAQYNLGVLyengrgvPKDPAKALEWYRKAAEQ--GDAD 208

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907173070 610 ALFNLGNLLKSQEKT----EEAIMLLKESIK 636
Cdd:COG0790   209 AQYNLGRLYLNGEGVekdlEKALRWLRKAAE 239
TPR COG0790
TPR repeat [General function prediction only];
591-798 4.10e-04

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 42.99  E-value: 4.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 591 AEAKMYYQKALQLHPQHNRALFNLGNLLKS----QEKTEEAIMLLKESIKYGpdFADAYSSLAsllaeqerfkeaeDIYQ 666
Cdd:COG0790    46 GAAAAAAAAAAAAAAGGAEAQYNLGLMYAEgrgvPKDYEKALEWFEKAAEQG--DAEAQYNLG-------------LMYE 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 667 AGIKNCPDssdlhnnyavflvdsgfPEKAVAHYQQAIQLSpsHHVAVVNLGRLYRSlGEN-----SKAEEWYRRALKvAR 741
Cdd:COG0790   111 EGLGVPQD-----------------YAKALEWYEKAAEQG--DADAQYNLGLLYLN-GEGvpkdpAKAAEWYRKAAE-QG 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907173070 742 TAEVLSPLGALYYNtGR-----HKEALEVYREAVSL--QPSQRELRLALAQVLAVMGQTKEAEK 798
Cdd:COG0790   170 DADAQYNLGVLYEN-GRgvpkdPAKALEWYRKAAEQgdADAQYNLGRLYLNGEGVEKDLEKALR 232
TPR_7 pfam13176
Tetratricopeptide repeat;
715-744 4.80e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 38.29  E-value: 4.80e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1907173070 715 NLGRLYRSLGENSKAEEWYRRALKVARTAE 744
Cdd:pfam13176   4 NLGRIYRKLGDYDEAISLYEQALALAKDPY 33
TPR_11 pfam13414
TPR repeat;
717-757 5.01e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.61  E-value: 5.01e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1907173070 717 GRLYRSLGENSKAEEWYRRALKV-ARTAEVLSPLGALYYNTG 757
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLdPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
750-791 5.42e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.22  E-value: 5.42e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1907173070 750 GALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMG 791
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 753-903 5.63e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 5.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 753 YYNTGRHKEALEVYREAVSLQPSQRelrlalaqvlavmgQTKEAekitshivseeprclecYRLLSAIHSKQEHHGKALE 832
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNSP--------------LAPDA-----------------LYWLGEAYYALGDYDEAAE 51

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907173070 833 AIEKALQLKPKDPKViSELFFTKGNQLREQNLLDKAfegsyvsaRAYYERALKLVPDSKLLKENLAKLDRL 903
Cdd:COG1729    52 AFEKLLKRYPDSPKA-PDALLKLGLSYLELGDYDKA--------RATLEELIKKYPDSEAAKEARARLARL 113
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
715-889 5.90e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.21  E-value: 5.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 715 NLGRLYRSLGENSKAEEWYRRALKVARTAEVLSP-LGALYYNTGRHKEALEVYREAV-SLQPSQRELRLA-----LAQVL 787
Cdd:COG4785     4 LALALLLALALAAAAASKAAILLAALLFAAVLALaIALADLALALAAAALAAAALAAeRIDRALALPDLAqlyyeRGVAY 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 788 AVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPKViselFFTKGNqlreqnlldk 867
Cdd:COG4785    84 DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA----YLNRGI---------- 149

                         170       180
                  ....*....|....*....|....
gi 1907173070 868 AFE--GSYVSARAYYERALKLVPD 889
Cdd:COG4785   150 ALYylGRYELAIADLEKALELDPN 173
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 715-776 6.36e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.86  E-value: 6.36e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907173070 715 NLGRLYRSLGENSKAEEWYRRALKVA----RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQ 776
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFpespDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 688-796 7.53e-04

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 40.75  E-value: 7.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  688 DSGFPEKAVAHYQQAIqlspshhvavvnlgRLYR--SLGENSkAEEW---YRRALKVARtAEVLSPLGALYYNTGRHKEA 762
Cdd:smart01043  17 LAADPEAALALLEAAL--------------ALYRgpLLADVP-DEDWaeaERERLRELR-LEALEALAEALLALGRHEEA 80

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1907173070  763 LEVYREAVSLQPSQRELRLALAQVLAVMGQTKEA 796
Cdd:smart01043  81 LALLERLLALDPLRERLHRLLMRALYRAGRRAEA 114
TPR_1 pfam00515
Tetratricopeptide repeat;
543-576 7.65e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 7.65e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1907173070 543 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRH 576
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 829-912 7.86e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 7.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 829 KALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAfegsyvsaRAYYERALKLVPDSKLLKENLAKLDRLERRLQ 908
Cdd:COG4235     1 EAIARLRQALAANPNDA----EGWLLLGRAYLRLGRYDEA--------LAAYEKALRLDPDNADALLDLAEALLAAGDTE 68


                  ....
gi 1907173070 909 EVRE 912
Cdd:COG4235    69 EAEE 72
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 529-579 9.00e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 9.00e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1907173070 529 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASA 579
Cdd:COG4235    71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
COG3899 COG3899
Predicted ATPase [General function prediction only];
554-788 9.69e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 43.31  E-value: 9.69e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  554 KDQGRNKEAIYHYRTALKLYP------RHASALNNLGT---LTKDMAEAKMYYQKALQLHPQHNRALFNLGNLlksqekT 624
Cdd:COG3899    716 LARGAYAEALRYLERALELLPpdpeeeYRLALLLELAEalyLAGRFEEAEALLERALAARALAALAALRHGNP------P 789

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  625 EEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAgikncpdssdlHNNYAVFLVDSGFPEKAVAHYQQAIQ 704
Cdd:COG3899    790 ASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEARA-----------LFNLGFILHWLGPLREALELLREALE 858

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  705 LSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVLSPLGALYyntgRHKEALEVYREAVSLQPSQRELRLALA 784
Cdd:COG3899    859 AGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAA----AAAAALAAAELARLAAAAAAAAALALA 934


                   ....
gi 1907173070  785 QVLA 788
Cdd:COG3899    935 AAAA 938
TPR_19 pfam14559
Tetratricopeptide repeat;
692-741 1.05e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.33  E-value: 1.05e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1907173070 692 PEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVAR 741
Cdd:pfam14559   4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADP 53
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 749-774 1.35e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.12  E-value: 1.35e-03
                          10        20
                  ....*....|....*....|....*.
gi 1907173070 749 LGALYYNTGRHKEALEVYREAVSLQP 774
Cdd:pfam07719   7 LGLAYYKLGDYEEALEAYEKALELDP 32
TPR_1 pfam00515
Tetratricopeptide repeat;
743-775 1.61e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 1.61e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1907173070 743 AEVLSPLGALYYNTGRHKEALEVYREAVSLQPS 775
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 724-776 1.64e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 40.43  E-value: 1.64e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1907173070 724 GENSKAEEWYRRALKVARTA----EVLSPLGALYYNTGRHKEALEVYREAVSLQPSQ 776
Cdd:PRK02603   49 GEYAEALENYEEALKLEEDPndrsYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
699-870 1.69e-03

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 42.15  E-value: 1.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 699 YQQAIQLSPSHHVAVVnLGRLYRSLGENSKAEEWyrralKVARTAEVLSPLGALYYNTGRH----------KEALEVYRE 768
Cdd:PRK12370  213 HQESIKLIEHQPASLL-QNKIANLLLRCIPGLRW-----DTKQISELNSIDSTMVYLRGKHelnqytpyslQQALKLLTQ 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 769 AVSLQP-------SQRELRLALAQV------LAVMGQTKEAEKITShIVSEEPRCLECYRLLSAIHSKQEhHGKALeaIE 835
Cdd:PRK12370  287 CVNMSPnsiapycALAECYLSMAQMgifdkqNAMIKAKEHAIKATE-LDHNNPQALGLLGLINTIHSEYI-VGSLL--FK 362

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1907173070 836 KALQLKPKDPKVI---SELFFTKGNQLREQNLLDKAFE 870
Cdd:PRK12370  363 QANLLSPISADIKyyyGWNLFMAGQLEEALQTINECLK 400
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 561-798 2.09e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 41.83  E-value: 2.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 561 EAIYHYRTALkLYPRHASALNNLGTLTKDMAEAKmYYQKALQL----------------HPQHNRALFNLGNLLKSQEKT 624
Cdd:NF040586  544 REVLRRRRRV-LGPDHPRTLLSANNLARDLRELG-RYAEALDLleealeryrevlggpdHPDTLRAAKSLAVALRRAGRL 621

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 625 EEAIMLLKESI-----KYGPDFADAYS---SLASLLAEQERFKEAEDIyqagikncpdssdlhnnyavflvdsgfPEKAV 696
Cdd:NF040586  622 EEALELAEDTYeryrrRFGPDHPDTLAaalSLANDLRALGDADEAREL---------------------------AREVL 674

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 697 AHYQQAIQLS-PSHHVAVVNLGRLYRSLGENSKAEEWYRRALkvARTAEVLSP-----------LGALYYNTGRHKEALE 764
Cdd:NF040586  675 DRYRRVLGEDhPFTLACRNNLAVLLRALGDPEEARELAEAAL--EGLRERLGPdhpytlaaavnLANDLAALGDLDAALG 752

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1907173070 765 VYREAVSLQPSQRELRL------------ALAQVLAVMGQTKEAEK 798
Cdd:NF040586  753 EEALERLRRLLGEDLRAgpdhpdtlacaaNLALDLRATGRTEEAEE 798
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 712-787 2.23e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 39.59  E-value: 2.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  712 AVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVL-SPLGALYYNTGRHKEALEVYREAVSL-------QPSqRELRLAL 783
Cdd:smart01043  63 ALEALAEALLALGRHEEALALLERLLALDPLRERLhRLLMRALYRAGRRAEALRAYRRLRRLladelgvEPG-PELRALY 141


                   ....
gi 1907173070  784 AQVL 787
Cdd:smart01043 142 EAIL 145
FAT pfam02259
FAT domain; The FAT domain is named after FRAP, ATM and TRRAP.
 520-709 3.35e-03

FAT domain; The FAT domain is named after FRAP, ATM and TRRAP.


Pssm-ID: 396714 [Multi-domain]  Cd Length: 342  Bit Score: 40.80  E-value: 3.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 520 KQNEIWLSRESLFR-SGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLgtLTKDMAEAKMYYQ 598
Cdd:pfam02259 161 KSGRFSLAEKALLKlLGEDPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSG--LEVINPTNLEEFT 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 599 KALqlhpqhNRALFNLGNLL------KSQEKTEEAIMLLKESIKYGPDFADAYSSLAslLAEQERFKEAEDiyqagIKNC 672
Cdd:pfam02259 239 ELL------ARCYLLKGKWQaalgqnWAEEKSEEILQAYLLATQFDPSWYKAWHTWA--LFNFEVLRKEEQ-----GKEE 305

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1907173070 673 PDSSDLhnnyavflvdSGFPEKAVAHYQQAIQLSPSH 709
Cdd:pfam02259 306 EGPEDL----------SRYVVPAVEGYLRSLSLSSEN 332
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 577-607 4.12e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 4.12e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1907173070  577 ASALNNLGTL---TKDMAEAKMYYQKALQLHPQH 607
Cdd:smart00028   1 AEALYNLGNAylkLGDYDEALEYYEKALELDPNN 34
COG3899 COG3899
Predicted ATPase [General function prediction only];
557-840 4.53e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 41.00  E-value: 4.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  557 GRNKEAIYHYRTALKLY-------------PRHASALNNLG-TLTKDMAEAKMYYQKALQLHPQHN------RALFNLGN 616
Cdd:COG3899    759 GRFEEAEALLERALAARalaalaalrhgnpPASARAYANLGlLLLGDYEEAYEFGELALALAERLGdrrleaRALFNLGF 838

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  617 LLKSQEKTEEAIMLLKESIKYG---PDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYA-VFLVDSGFP 692
Cdd:COG3899    839 ILHWLGPLREALELLREALEAGletGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAaAAALAAAEL 918

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070  693 EKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTAEVLspLGALYYNTGRHKEALEVYREAVSL 772
Cdd:COG3899    919 ARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAAL--AAAAAAAAAAAAAAAAAALEAAAA 996

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907173070  773 QPSQRELRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQL 840
Cdd:COG3899    997 ALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAA 1064
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 715-742 4.82e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 4.82e-03
                           10        20
                   ....*....|....*....|....*...
gi 1907173070  715 NLGRLYRSLGENSKAEEWYRRALKVART 742
Cdd:smart00028   6 NLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
577-607 4.96e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 4.96e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1907173070 577 ASALNNLGTL---TKDMAEAKMYYQKALQLHPQH 607
Cdd:pfam00515   1 AKALYNLGNAyfkLGKYDEALEYYEKALELNPNN 34
TPR_10 pfam13374
Tetratricopeptide repeat;
715-743 5.43e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 35.56  E-value: 5.43e-03
                          10        20
                  ....*....|....*....|....*....
gi 1907173070 715 NLGRLYRSLGENSKAEEWYRRALKVARTA 743
Cdd:pfam13374   7 NLANALRAQGRYDEAEELLEEALAIRERV 35
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 749-775 5.43e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 5.43e-03
                           10        20
                   ....*....|....*....|....*..
gi 1907173070  749 LGALYYNTGRHKEALEVYREAVSLQPS 775
Cdd:smart00028   7 LGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_17 pfam13431
Tetratricopeptide repeat;
596-628 5.49e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.21  E-value: 5.49e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1907173070 596 YYQKALQLHPQHNRALFNLGNLLKSQEKTEEAI 628
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 588-773 6.11e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 40.18  E-value: 6.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 588 KDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEEAIMLLKESIKYGPDFadaysslASLLAEQerfkeAEDIYQA 667
Cdd:PRK11788  194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-------LSEVLPK-----LMECYQA 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 668 giknCPDSSDLHNnyavFLvdsgfpekavahyQQAIQLSPSHHVAVVnLGRLYRSLGENSKAEEWYRRALKVARTAEVLS 747
Cdd:PRK11788  262 ----LGDEAEGLE----FL-------------RRALEEYPGADLLLA-LAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1907173070 748 PLgaLYY-----NTGRHKEALEVYREAVSLQ 773
Cdd:PRK11788  320 RL--LDYhlaeaEEGRAKESLLLLRDLVGEQ 348
TPR_1 pfam00515
Tetratricopeptide repeat;
715-742 8.44e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 8.44e-03
                          10        20
                  ....*....|....*....|....*...
gi 1907173070 715 NLGRLYRSLGENSKAEEWYRRALKVART 742
Cdd:pfam00515   6 NLGNAYFKLGKYDEALEYYEKALELNPN 33
DnrI COG3629
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ...
 673-788 9.79e-03

DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];


Pssm-ID: 442847 [Multi-domain]  Cd Length: 244  Bit Score: 38.67  E-value: 9.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907173070 673 PDSSDLHnnyaVF--LVD-----SGFPEKAVAHYQQAIQL-----------SPSHHVAVVNLGRLYRSLgenskAEEWYR 734
Cdd:COG3629    95 PDEVDLH----RFerLVAraraaAGDPAAAAALLREALALwrgpplaglpfEPWLEAERARLEELRLAA-----LEALAE 165

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907173070 735 RALKVARTAEVLSPLGAL-----------------YYNTGRHKEALEVYREAVS-------LQPSqRELRLALAQVLA 788
Cdd:COG3629   166 ALLALGRHAEALAELRRLvaahplrerlhrllmraLYRAGRRAEALAAYRRLRRrladelgVEPG-PELRALHRRILR 242
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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