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    flrt1.S fibronectin leucine rich transmembrane protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 444840, updated on 18-Sep-2024

    Summary

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    Official Symbol
    flrt1.S
    Official Full Name
    fibronectin leucine rich transmembrane protein 1 S homeolog
    Primary source
    Xenbase:XB-GENE-866428
    Locus tag
    XELAEV_18024223mg
    See related
    EnsemblRapid:ENSXLAG00005009691
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    flrt1
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    Genomic context

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    See flrt1.S in Genome Data Viewer
    Location:
    chromosome: 4S
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (1981271..2125136)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (1977318..2121762)

    Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene actin alpha 4 S homeolog Neighboring gene OTU deubiquitinase, ubiquitin aldehyde binding 1 S homeolog Neighboring gene MACRO domain containing 1 S homeolog Neighboring gene stress induced phosphoprotein 1 S homeolog Neighboring gene FKBP prolyl isomerase 2 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC84476

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in anchoring junction IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    fibronectin leucine rich transmembrane protein 1 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001092942.1 → NP_001086411.1  fibronectin leucine rich transmembrane protein 1 S homeolog

      See identical proteins and their annotated locations for NP_001086411.1

      Status: PROVISIONAL

      Source sequence(s)
      BC075250
      UniProtKB/TrEMBL
      Q6DJD2
      Conserved Domains (7) summary
      smart00013
      Location:61 → 91
      LRRNT; Leucine rich repeat N-terminal domain
      smart00060
      Location:446 → 514
      FN3; Fibronectin type 3 domain
      smart00082
      Location:335 → 372
      LRRCT; Leucine rich repeat C-terminal domain
      cd00116
      Location:92 → 339
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:91 → 114
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:115 → 135
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:278 → 336
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      1981271..2125136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018259615.2 → XP_018115104.1  fibronectin leucine rich transmembrane protein 1 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8GD88, A0A974CZN3
      Related
      ENSXLAP00005028403.1, ENSXLAT00005029140.1
      Conserved Domains (4) summary
      PRK15370
      Location:65 → 388
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      smart00060
      Location:446 → 514
      FN3; Fibronectin type 3 domain
      sd00031
      Location:91 → 114
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:115 → 135
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_041591325.1 → XP_041447259.1  fibronectin leucine rich transmembrane protein 1 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8GD88, A0A974CZN3
      Related
      ENSXLAP00005028389.1, ENSXLAT00005029126.1
      Conserved Domains (4) summary
      PRK15370
      Location:65 → 388
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      smart00060
      Location:446 → 514
      FN3; Fibronectin type 3 domain
      sd00031
      Location:91 → 114
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:115 → 135
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_041591326.1 → XP_041447260.1  fibronectin leucine rich transmembrane protein 1 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8GD88, A0A974CZN3
      Related
      ENSXLAP00005028358.1, ENSXLAT00005029095.1
      Conserved Domains (4) summary
      PRK15370
      Location:65 → 388
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      smart00060
      Location:446 → 514
      FN3; Fibronectin type 3 domain
      sd00031
      Location:91 → 114
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:115 → 135
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_041591327.1 → XP_041447261.1  fibronectin leucine rich transmembrane protein 1 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8GD88, A0A974CZN3
      Conserved Domains (4) summary
      PRK15370
      Location:65 → 388
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      smart00060
      Location:446 → 514
      FN3; Fibronectin type 3 domain
      sd00031
      Location:91 → 114
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:115 → 135
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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