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flrt1.S fibronectin leucine rich transmembrane protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444840, updated on 4-Nov-2024

Summary

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Official Symbol
flrt1.S
Official Full Name
fibronectin leucine rich transmembrane protein 1 S homeolog
Primary source
Xenbase:XB-GENE-866428
Locus tag
XELAEV_18024223mg
See related
EnsemblRapid:ENSXLAG00005009691 AllianceGenome:Xenbase:XB-GENE-866428
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
flrt1
Summary
Predicted to act upstream of or within cell adhesion. Predicted to be located in several cellular components, including endoplasmic reticulum membrane; extracellular space; and focal adhesion. Orthologous to human FLRT1 (fibronectin leucine rich transmembrane protein 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See flrt1.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (1981271..2125136)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (1977318..2121762)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene actin alpha 4 S homeolog Neighboring gene OTU deubiquitinase, ubiquitin aldehyde binding 1 S homeolog Neighboring gene MACRO domain containing 1 S homeolog Neighboring gene stress induced phosphoprotein 1 S homeolog Neighboring gene FKBP prolyl isomerase 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84476

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in anchoring junction IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
fibronectin leucine rich transmembrane protein 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092942.1 → NP_001086411.1  fibronectin leucine rich transmembrane protein 1 S homeolog

    See identical proteins and their annotated locations for NP_001086411.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075250
    UniProtKB/TrEMBL
    Q6DJD2
    Conserved Domains (7) summary
    smart00013
    Location:61 → 91
    LRRNT; Leucine rich repeat N-terminal domain
    smart00060
    Location:446 → 514
    FN3; Fibronectin type 3 domain
    smart00082
    Location:335 → 372
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:92 → 339
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:91 → 114
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:115 → 135
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:278 → 336
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    1981271..2125136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018259615.2 → XP_018115104.1  fibronectin leucine rich transmembrane protein 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GD88, A0A974CZN3
    Related
    ENSXLAP00005028403.1, ENSXLAT00005029140.1
    Conserved Domains (4) summary
    PRK15370
    Location:65 → 388
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00060
    Location:446 → 514
    FN3; Fibronectin type 3 domain
    sd00031
    Location:91 → 114
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:115 → 135
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_041591325.1 → XP_041447259.1  fibronectin leucine rich transmembrane protein 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GD88, A0A974CZN3
    Related
    ENSXLAP00005028389.1, ENSXLAT00005029126.1
    Conserved Domains (4) summary
    PRK15370
    Location:65 → 388
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00060
    Location:446 → 514
    FN3; Fibronectin type 3 domain
    sd00031
    Location:91 → 114
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:115 → 135
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_041591326.1 → XP_041447260.1  fibronectin leucine rich transmembrane protein 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GD88, A0A974CZN3
    Related
    ENSXLAP00005028358.1, ENSXLAT00005029095.1
    Conserved Domains (4) summary
    PRK15370
    Location:65 → 388
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00060
    Location:446 → 514
    FN3; Fibronectin type 3 domain
    sd00031
    Location:91 → 114
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:115 → 135
    LRR_RI; leucine-rich repeat [structural motif]

  4. XM_041591327.1 → XP_041447261.1  fibronectin leucine rich transmembrane protein 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GD88, A0A974CZN3
    Conserved Domains (4) summary
    PRK15370
    Location:65 → 388
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00060
    Location:446 → 514
    FN3; Fibronectin type 3 domain
    sd00031
    Location:91 → 114
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:115 → 135
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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