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LOC121549992 dnaJ homolog subfamily B member 6 [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121549992, updated on 28-May-2024

Summary

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Gene symbol
LOC121549992
Gene description
dnaJ homolog subfamily B member 6
See related
EnsemblRapid:ENSCCFG00005038955
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121549992 in Genome Data Viewer
Location:
chromosome: 34
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 34 NC_059225.1 (29574269..29634854, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 34 NC_055100.1 (30973634..31034220, complement)

Chromosome 34 - NC_059225.1Genomic Context describing neighboring genes Neighboring gene receptor-type tyrosine-protein phosphatase N2 Neighboring gene uncharacterized LOC121549990 Neighboring gene uncharacterized LOC121549991 Neighboring gene ubiquitin-protein ligase E3C-like Neighboring gene motor neuron and pancreas homeobox protein 1-like Neighboring gene transfer RNA alanine (anticodon CGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily B member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059225.1 Reference ASM2061545v1 Primary Assembly

    Range
    29574269..29634854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041862033.2 → XP_041717967.1  dnaJ homolog subfamily B member 6 isoform X1

    Conserved Domains (1) summary
    PRK10767
    Location:4 → 136
    PRK10767; chaperone protein DnaJ; Provisional

  2. XM_041862036.2 → XP_041717970.1  dnaJ homolog subfamily B member 6 isoform X3

    Conserved Domains (1) summary
    COG0484
    Location:2 → 115
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

  3. XM_041862035.2 → XP_041717969.1  dnaJ homolog subfamily B member 6 isoform X2

    Related
    ENSCCFP00005089367.1, ENSCCFT00005096159.1
    Conserved Domains (1) summary
    PRK10767
    Location:4 → 136
    PRK10767; chaperone protein DnaJ; Provisional

  4. XM_041862032.2 → XP_041717966.1  dnaJ homolog subfamily B member 6 isoform X1

    Conserved Domains (1) summary
    PRK10767
    Location:4 → 136
    PRK10767; chaperone protein DnaJ; Provisional

  5. XM_041862034.2 → XP_041717968.1  dnaJ homolog subfamily B member 6 isoform X1

    Conserved Domains (1) summary
    PRK10767
    Location:4 → 136
    PRK10767; chaperone protein DnaJ; Provisional

  6. XM_045210539.1 → XP_045066474.1  dnaJ homolog subfamily B member 6 isoform X5

  7. XM_045210538.1 → XP_045066473.1  dnaJ homolog subfamily B member 6 isoform X4

    Related
    ENSCCFP00005089365.1, ENSCCFT00005096157.1
Nucleotide Protein
Heading Accession and Version

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