NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2047244346|ref|XP_041717970|]
View 

dnaJ homolog subfamily B member 6 isoform X3 [Coregonus clupeaformis]

Protein Classification

molecular chaperone DnaJ( domain architecture ID 1000952)

molecular chaperone DnaJ, part of the DnaK-DnaJ-GrpE system, prevents the aggregation of unfolded substrate and acts primarily by stimulating the ATPase activity of Hsp70

CATH:  2.10.230.10
Gene Ontology:  GO:0051082|GO:0005524|GO:0009408|GO:0006457
PubMed:  8016869|15063739|29290615
SCOP:  4003813|4002149

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK10767 super family cl35946
chaperone protein DnaJ; Provisional
 4-114 2.75e-36

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK10767:

Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 133.35  E-value: 2.75e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   4 YYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDG---------GHYH-NADHFGGGft 73
Cdd:PRK10767    6 YYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKE-AEEKFKEIKEAYEVLSDPqkraaydqyGHAAfEQGGGGGG-- 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2047244346  74 frnpedvfrefFGGRDPFADFFAD--DNFFGGGQRQRGVSQSR 114
Cdd:PRK10767   83 -----------FGGGGGFGDIFGDifGDIFGGGRGGGRQRARR 114
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 4-114 2.75e-36

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 133.35  E-value: 2.75e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   4 YYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDG---------GHYH-NADHFGGGft 73
Cdd:PRK10767    6 YYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKE-AEEKFKEIKEAYEVLSDPqkraaydqyGHAAfEQGGGGGG-- 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2047244346  74 frnpedvfrefFGGRDPFADFFAD--DNFFGGGQRQRGVSQSR 114
Cdd:PRK10767   83 -----------FGGGGGFGDIFGDifGDIFGGGRGGGRQRARR 114
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 4-108 2.05e-34

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 128.10  E-value: 2.05e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   4 YYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSD----------GghyHNADHFGGGFT 73
Cdd:TIGR02349   2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDpekraqydqfG---HAGFNGGGGGG 76

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2047244346  74 FRNPEDVFREFFGG-RDPFADFFADDNFFGGGQRQR 108
Cdd:TIGR02349  77 GGGFNGFDIGFFGDfGDIFGDFFGGGGGSGRRRRSG 112
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 3-58 4.56e-31

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 110.64  E-value: 4.56e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSD 58
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPE-AEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
2-58 2.09e-30

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 108.86  E-value: 2.09e-30
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2047244346    2 TEYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEDAERRFKEISEAYEVLSD 58
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 4-58 2.33e-28

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 106.33  E-value: 2.33e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2047244346   4 YYQILGVQRNASAEDIKKAYRKLALKWHPDKNPeNQEDAERRFKEISEAYEVLSD 58
Cdd:COG0484     2 YYEILGVSRDASAEEIKKAYRKLAKKYHPDRNP-GDPEAEEKFKEINEAYEVLSD 55
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 3-58 3.43e-28

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 103.01  E-value: 3.43e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENqEDAERRFKEISEAYEVLSD 58
Cdd:cd06257     1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 4-114 2.75e-36

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 133.35  E-value: 2.75e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   4 YYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDG---------GHYH-NADHFGGGft 73
Cdd:PRK10767    6 YYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKE-AEEKFKEIKEAYEVLSDPqkraaydqyGHAAfEQGGGGGG-- 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2047244346  74 frnpedvfrefFGGRDPFADFFAD--DNFFGGGQRQRGVSQSR 114
Cdd:PRK10767   83 -----------FGGGGGFGDIFGDifGDIFGGGRGGGRQRARR 114
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 4-108 2.05e-34

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 128.10  E-value: 2.05e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   4 YYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSD----------GghyHNADHFGGGFT 73
Cdd:TIGR02349   2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDpekraqydqfG---HAGFNGGGGGG 76

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2047244346  74 FRNPEDVFREFFGG-RDPFADFFADDNFFGGGQRQR 108
Cdd:TIGR02349  77 GGGFNGFDIGFFGDfGDIFGDFFGGGGGSGRRRRSG 112
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 3-114 3.95e-31

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 119.57  E-value: 3.95e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSDGGHYHNADHFG-GGFTFR-NPEDV 80
Cdd:PRK14298    6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDRFGhAGIDNQySAEDI 83

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2047244346  81 FREF-FGGrdpFADFFadDNFFGGGQRQRGVSQSR 114
Cdd:PRK14298   84 FRGAdFGG---FGDIF--EMFFGGGGRRGRMGPRR 113
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 3-58 4.56e-31

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 110.64  E-value: 4.56e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSD 58
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPE-AEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
2-58 2.09e-30

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 108.86  E-value: 2.09e-30
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2047244346    2 TEYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEDAERRFKEISEAYEVLSD 58
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57
PRK14280 PRK14280
molecular chaperone DnaJ;
3-108 1.79e-29

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 115.20  E-value: 1.79e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSDGGHYHNADHFG--------GGFTF 74
Cdd:PRK14280    5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRAQYDQFGhagpnqgfGGGGF 82

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2047244346  75 RNPEdvfrefFGGRDPFADFFadDNFFGGGQRQR 108
Cdd:PRK14280   83 GGGD------FGGGFGFEDIF--SSFFGGGGRRR 108
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 3-108 1.91e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 115.03  E-value: 1.91e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEDAERRFKEISEAYEVLSDGGHYHNADH-----FGGG------ 71
Cdd:PRK14290    4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQtgtvdFGAGgsnfnw 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2047244346  72 --FT-FRNPEDVFREFFGGRdpfadfFADDNFFGGGQRQR 108
Cdd:PRK14290   84 dnFThFSDINDIFNQIFGGN------FGSDFFSGFGNQQS 117
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 3-109 4.32e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 114.07  E-value: 4.32e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDGGHYHNADHFG-------GGFT-F 74
Cdd:PRK14301    5 DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPE-AEQKFKEAAEAYEVLRDAEKRARYDRFGhagvngnGGFGgF 83

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2047244346  75 RNPEDVFREFfggRDPFADFFAddnfFGGGQRQRG 109
Cdd:PRK14301   84 SSAEDIFSHF---SDIFGDLFG----FSGGGSRRG 111
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 3-108 5.97e-29

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 113.73  E-value: 5.97e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEDAERRFKEISEAYEVLSDGGHYHNADHFG------------- 69
Cdd:PRK14282    5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGyvgeqppyqetes 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2047244346  70 GGFTFrnpEDVFREF--FGGRDPFADFFADDnffGGGQRQR 108
Cdd:PRK14282   85 GGGFF---EDIFKDFenIFNRDIFDIFFGER---RTQEEQR 119
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 4-58 2.33e-28

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 106.33  E-value: 2.33e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2047244346   4 YYQILGVQRNASAEDIKKAYRKLALKWHPDKNPeNQEDAERRFKEISEAYEVLSD 58
Cdd:COG0484     2 YYEILGVSRDASAEEIKKAYRKLAKKYHPDRNP-GDPEAEEKFKEINEAYEVLSD 55
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 3-58 3.43e-28

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 103.01  E-value: 3.43e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENqEDAERRFKEISEAYEVLSD 58
Cdd:cd06257     1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 4-114 1.17e-27

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 109.85  E-value: 1.17e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   4 YYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDG---GHYHNADHFG---GGFT-FRN 76
Cdd:PRK14294    6 YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKE-AEELFKEAAEAYEVLSDPkkrGIYDQYGHEGlsgTGFSgFSG 84

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2047244346  77 PEDVFREFfggRDPFADFFAddnfFGGGQRQRGVSQSR 114
Cdd:PRK14294   85 FDDIFSSF---GDIFEDFFG----FGGGRRGRSRTAVR 115
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 3-108 1.87e-27

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 109.90  E-value: 1.87e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDGGHYHNADHFG------------- 69
Cdd:PRK14281    4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKE-AEEHFKEVNEAYEVLSNDDKRRRYDQFGhagvgssaasggg 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2047244346  70 -----GGFTFRNPEDVFREFFGG---RDPFADFFADDNFFGGGQRQR 108
Cdd:PRK14281   83 pgyggGGGDFNDIFSAFNDMFGGgarRGGGSPFGFEDVFGGGGRRRR 129
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 3-108 4.49e-27

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 108.73  E-value: 4.49e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDGGHYHNADHFG-----------GG 71
Cdd:PRK14277    6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKE-AEQKFKEINEAYEILSDPQKRAQYDQFGhaafdpggfgqGG 84

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2047244346  72 FTFRNPEDVFREF-FGG-RDPFADFFADdnFFGGGQRQR 108
Cdd:PRK14277   85 FGQGGFGGGGFDFdFGGfGDIFEDIFGD--FFGTGRRRA 121
PRK14297 PRK14297
molecular chaperone DnaJ;
3-104 5.52e-27

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 108.33  E-value: 5.52e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDGGHYHNADHFG-------GGFTFR 75
Cdd:PRK14297    5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKE-AEEKFKEINEAYQVLSDPQKKAQYDQFGtadfngaGGFGSG 83

                          90       100       110
                  ....*....|....*....|....*....|
gi 2047244346  76 NpedvFREF-FGGRDPFADFFadDNFFGGG 104
Cdd:PRK14297   84 G----FGGFdFSDMGGFGDIF--DSFFGGG 107
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 2-103 1.35e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 107.62  E-value: 1.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   2 TEYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDGGHYHNADHFG-----------G 70
Cdd:PRK14284    1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAE-AEKRFKEVSEAYEVLSDAQKRESYDRYGkdgpfagaggfG 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2047244346  71 GFTFRNPEDVFREF-------FGGRDPFADFfaddnFFGG 103
Cdd:PRK14284   80 GAGMGNMEDALRTFmgafggeFGGGGSFFEG-----LFGG 114
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 3-109 4.00e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 106.06  E-value: 4.00e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSDGGHYHNADHFG----GGFT----F 74
Cdd:PRK14283    6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYDQFGhagmDGFSqediF 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2047244346  75 RNP--EDVFREFFGGRDPFADFFAddnfFGGGQR---QRG 109
Cdd:PRK14283   84 NNInfEDIFQGFGFGIGNIFDMFG----FGGGSRhgpQRG 119
PRK14289 PRK14289
molecular chaperone DnaJ;
3-110 4.06e-26

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 106.07  E-value: 4.06e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDGGHYHNADHFG----------GGF 72
Cdd:PRK14289    6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKE-AEEKFKEAAEAYDVLSDPDKRSRYDQFGhagvggaaggGGF 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2047244346  73 T---------FRNPEDVFREFFGGrdpFADFFAddnfFGGGQRQRGV 110
Cdd:PRK14289   85 SgegmsmediFSMFGDIFGGHGGG---FGGFGG----FGGGGSQQRV 124
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 3-58 7.56e-26

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 96.99  E-value: 7.56e-26
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQeDAERRFKEISEAYEVLSD 58
Cdd:COG5407     1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGDP-KAEERFKEINEAYELLSD 55
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 3-114 9.11e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 105.24  E-value: 9.11e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSDGGHYHNADHFG-----GGFTFRNP 77
Cdd:PRK14291    4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDQFGhaafsGSGQQQQG 81

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2047244346  78 EDVFREFFGGR--DPFADFFADDNFFGGGQRQRGVSQSR 114
Cdd:PRK14291   82 QEGFSDFGGGNieDILEDVFDIFGFGDIFGRRRATRERR 120
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 2-114 1.90e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 104.01  E-value: 1.90e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   2 TEYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSDGGHYHNADHFG-----GGFtfrn 76
Cdd:PRK14276    4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYDQYGaaganGGF---- 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2047244346  77 peDVFREFFGGRDPFADF--FAD--DNFFGGGQRQRGVSQSR 114
Cdd:PRK14276   78 --GGGAGGFGGFDGSGGFggFEDifSSFFGGGGARRNPNAPR 117
PRK14293 PRK14293
molecular chaperone DnaJ;
1-115 1.91e-25

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 103.92  E-value: 1.91e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   1 MTEYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSDGGHYHNADHFG-------GGFt 73
Cdd:PRK14293    2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQFGeagvsgaAGF- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2047244346  74 frnpedvfrEFFGGRDPFADFFadDNFFGG--GQRQRGVSQSRT 115
Cdd:PRK14293   79 ---------PDMGDMGGFADIF--ETFFSGfgGAGGQGGRRRRR 111
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 2-109 6.02e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 102.82  E-value: 6.02e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   2 TEYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSD----------GGHYHNADHFGGG 71
Cdd:PRK14278    3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDpekrrivdlgGDPLESAGGGGGG 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2047244346  72 FTFRnpedvfrefFGGrdpFADFFadDNFFGGGQRQRG 109
Cdd:PRK14278   81 FGGG---------FGG---LGDVF--EAFFGGGAASRG 104
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 4-109 3.81e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 97.75  E-value: 3.81e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   4 YYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDGGHYHNADHFG--------GGF--- 72
Cdd:PRK14286    6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKE-SEEKFKEATEAYEILRDPKKRQAYDQFGkagvnagaGGFgqg 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2047244346  73 TFRNPEDVFREFfggRDPFADFFAD--DNFFGGGQR---QRG 109
Cdd:PRK14286   85 AYTDFSDIFGDF---GDIFGDFFGGgrGGGSGGGRRsgpQRG 123
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
1-58 1.17e-22

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 89.78  E-value: 1.17e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2047244346   1 MTEYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEDAERRFKEISEAYEVLSD 58
Cdd:COG2214     4 LKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELKALAEELFQRLNEAYEVLSD 61
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 1-112 3.73e-22

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 94.96  E-value: 3.73e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   1 MTEYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSDGGHYHNADHFG----------- 69
Cdd:PRK14292    1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDRFGtapgagmpggd 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2047244346  70 --GGFTFrNPEDVFREFFGGRDpfadffaddnfFGGGQRQRGVSQ 112
Cdd:PRK14292   79 pfGGMGF-DPMDIFEQLFGGAG-----------FGGGRGRRGPAR 111
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 3-107 8.35e-22

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 93.90  E-value: 8.35e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDGGHYHNADHFG-----GGFTFRNp 77
Cdd:PRK14285    4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKE-AESIFKEATEAYEVLIDDNKRAQYDRFGhtafeGGGGFEG- 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2047244346  78 edvfreFFGGRDPFADFFAD-----DNFFGGGQRQ 107
Cdd:PRK14285   82 ------FSGGFSGFSDIFEDfgdifDSFFTGNRGQ 110
PRK14279 PRK14279
molecular chaperone DnaJ;
3-105 1.94e-21

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 93.26  E-value: 1.94e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDGGHYHNADHF-----GGGFTfRNP 77
Cdd:PRK14279   10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPA-AEERFKAVSEAHDVLSDPAKRKEYDETrrlfaGGGFG-GRR 87

                          90       100       110
                  ....*....|....*....|....*....|
gi 2047244346  78 EDVFREF--FGGRDPFADFFADDNFFGGGQ 105
Cdd:PRK14279   88 FDGGGGFggFGTGGDGAEFNLNDLFDAAGR 117
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 3-109 1.30e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 89.61  E-value: 1.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSDGGHYHNADHFG------------- 69
Cdd:PRK14299    5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTYGttaasagwqgppp 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2047244346  70 -----GGFTFRNPED---VFREFFGGRDPFADFFADDNFFGGGQRQRG 109
Cdd:PRK14299   83 gppggGDFSGFNVGDfsdFFQQLFGGRGGFGGFGDLFGSVGRRARKGR 130
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 3-114 1.91e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 90.07  E-value: 1.91e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPEnqEDAERRFKEISEAYEVLSD---GGHYHNADH------FGGGFT 73
Cdd:PRK14287    5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDpqkKAHYDQFGHtdpnqgFGGGGA 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2047244346  74 frnpedvfreffGGRDPFADFFadDNFFGGGQRQRGVSQSR 114
Cdd:PRK14287   83 ------------GDFGGFSDIF--DMFFGGGGGRRNPNAPR 109
PRK14295 PRK14295
molecular chaperone DnaJ;
3-109 1.55e-19

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 87.60  E-value: 1.55e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDGGHYHNADH----FGGGftfrnpe 78
Cdd:PRK14295   10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAK-AEERFKEISEAYDVLSDEKKRKEYDEarslFGNG------- 81

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2047244346  79 dVFREFFGGRDPFADFFADDNFFGGGQRQRG 109
Cdd:PRK14295   82 -GFRPGPGGGGGGGFNFDLGDLFGGGAQGGG 111
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 3-111 3.16e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 86.61  E-value: 3.16e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNpeNQEDAERRFKEISEAYEVLSDGGHYHNADHFGGGfTFRNPEDvfR 82
Cdd:PRK14300    4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTT--DAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD-AFQNQQS--R 78

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2047244346  83 EFFGGR--------DPFADFFADdnFFGGGQRQRGVS 111
Cdd:PRK14300   79 GGGGNHggfhpdinDIFGDFFSD--FMGGSRRSRPTS 113
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 3-108 2.37e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 81.15  E-value: 2.37e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENqeDAERRFKEISEAYEVLSDGGHYHNADHFG-------GGFT-- 73
Cdd:PRK14296    5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP--DAHDKMVEINEAADVLLDKDKRKQYDQFGhaafdgsSGFSsn 82

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2047244346  74 FRNPEDVFREF--FGGRDpFADFFADdnFFGGGQRQR 108
Cdd:PRK14296   83 FGDFEDLFSNMgsSGFSS-FTNIFSD--FFGSNKSDY 116
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 3-87 3.49e-17

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 81.02  E-value: 3.49e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDK--NPEnqedaerRFKEISEAYEVLSDGGHYHNADHFG-----GGFTFR 75
Cdd:PTZ00037   29 KLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKggDPE-------KFKEISRAYEVLSDPEKRKIYDEYGeegleGGEQPA 101

                          90
                  ....*....|..
gi 2047244346  76 NPEDVFREFFGG 87
Cdd:PTZ00037  102 DASDLFDLIFGG 113
PRK10266 PRK10266
curved DNA-binding protein;
3-108 3.35e-16

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 77.17  E-value: 3.35e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENqeDAERRFKEISEAYEVLSDGGHYHNADHFgggFTFRNPEDVFR 82
Cdd:PRK10266    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRAEYDQL---WQHRNDPQFNR 79

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2047244346  83 EF------FGGRDPFADFFAddNFFGGGQRQR 108
Cdd:PRK10266   80 QFqhgdgqSFNAEDFDDIFS--SIFGQHARQS 109
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
1-58 2.34e-13

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 64.05  E-value: 2.34e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2047244346   1 MTEYYQILGVQRNASAEDIKKAYRKLALKWHPDK-----NPENQEDAERRFKEISEAYEVLSD 58
Cdd:COG1076     3 LDDAFELLGLPPDADDAELKRAYRKLQREHHPDRlaaglPEEEQRLALQKAAAINEAYETLKD 65
PRK14288 PRK14288
molecular chaperone DnaJ;
4-108 4.49e-13

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 68.95  E-value: 4.49e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   4 YYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQEdAERRFKEISEAYEVLSDGGHYHNADHFG--GGFTFRNPEDVF 81
Cdd:PRK14288    5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKE-AEEKFKLINEAYGVLSDEKKRALYDRYGkkGLNQAGASQSDF 83

                          90       100
                  ....*....|....*....|....*....
gi 2047244346  82 REFFggrDPFADFFADDNFFG--GGQRQR 108
Cdd:PRK14288   84 SDFF---EDLGSFFEDAFGFGarGSKRQK 109
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 2-94 5.16e-08

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 54.02  E-value: 5.16e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346    2 TEYYQILGVQRNASAEDIKKAYRKLALKWHPDKNPENQedAERRFKEISEAYEVLSDGGHYHNADHFG----GGFTFRNP 77
Cdd:PTZ00341   573 TLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNE--GFHKFKKINEAYQILGDIDKKKMYNKFGydgiKGVNFIHP 650

                           90
                   ....*....|....*..
gi 2047244346   78 EDVFreFFGGRDPFADF 94
Cdd:PTZ00341   651 SIFY--LLASLEKFADF 665
djlA PRK09430
co-chaperone DjlA;
5-56 7.87e-08

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 52.51  E-value: 7.87e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2047244346   5 YQILGVQRNASAEDIKKAYRKLALKWHPDK------NPENQEDAERRFKEISEAYEVL 56
Cdd:PRK09430  203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKlvakglPPEMMEMAKEKAQEIQAAYELI 260
PHA03102 PHA03102
Small T antigen; Reviewed
 6-97 5.80e-05

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 42.35  E-value: 5.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   6 QILGVQRNA--SAEDIKKAYRKLALKWHPDK--NPEnqedaerRFKEISEAYEVLSDGGHYHNADHFGGGftfrnpeDVF 81
Cdd:PHA03102    9 DLLGLPRSAwgNLPLMRKAYLRKCLEFHPDKggDEE-------KMKELNTLYKKFRESVKSLRDLDGEED-------SSS 74

                          90
                  ....*....|....*.
gi 2047244346  82 REFFGGRDPFADFFAD 97
Cdd:PHA03102   75 EEEDVPSGYVGATFGD 90
hscB PRK01356
co-chaperone HscB; Provisional
 1-67 4.32e-04

co-chaperone HscB; Provisional


Pssm-ID: 167217 [Multi-domain]  Cd Length: 166  Bit Score: 40.25  E-value: 4.32e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2047244346   1 MTEYYQILGVQR--NASAEDIKKAYRKLALKWHPDKNPENQEDAERRF--KEISEAYEVLSDGghYHNADH 67
Cdd:PRK01356    1 MQNYFQLLGLPQeyNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIiaSELNNAYSTLKDA--LKRAEY 69
PHA02624 PHA02624
large T antigen; Provisional
 6-101 4.43e-03

large T antigen; Provisional


Pssm-ID: 222912 [Multi-domain]  Cd Length: 647  Bit Score: 38.43  E-value: 4.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   6 QILGVQRNA--SAEDIKKAYRKLALKWHPDK--NPEnqedaerRFKEISEAYEVLSDgGHYHNADHFGGGFTFRNP---- 77
Cdd:PHA02624   15 DLLGLPMAAwgNLPLMRKAYLRKCKEYHPDKggDEE-------KMKRLNSLYKKLQE-GVKSARQSFGTQDSSEIPtygt 86

                          90       100
                  ....*....|....*....|....*..
gi 2047244346  78 ---EDVFREFFGGRDPfaDFFADDNFF 101
Cdd:PHA02624   87 pewEQWWEEFNEKWDE--DLFCDEELS 111
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 3-58 4.68e-03

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 38.09  E-value: 4.68e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047244346   3 EYYQILGVQR---NASAEDIKKAYRKLALKWHPDKNPENQE-DAERRFKEISEAYEVLSD 58
Cdd:COG5269    44 DLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDKTAAGGNkGCDEFFKLIQKAREVLGD 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH