U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CD109 CD109 molecule [ Cygnus atratus (black swan) ]

Gene ID: 118246123, updated on 20-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CD109
Gene description
CD109 molecule
See related
EnsemblRapid:ENSACYG00000008207
Gene type
protein coding
RefSeq status
MODEL
Organism
Cygnus atratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CD109 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 3 NC_066364.1 (32768751..32851140)
100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336597.1 (17228205..17310594)

Chromosome 3 - NC_066364.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 alpha 1 Neighboring gene solute carrier family 17 member 5 Neighboring gene uncharacterized LOC118246186 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: CD109 antigen

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

Genomic

  1. NC_066364.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Range
    32768751..32851140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035542938.1 → XP_035398831.1  LOW QUALITY PROTEIN: CD109 antigen

    Related
    ENSACYP00000017823.1, ENSACYT00000019411.1
    Conserved Domains (5) summary
    COG2373
    Location:54 → 992
    YfaS; Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only]
    cd02897
    Location:899 → 1186
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:685 → 776
    A2M; Alpha-2-macroglobulin family
    pfam07677
    Location:1304 → 1388
    A2M_recep; A-macroglobulin receptor
    pfam07703
    Location:462 → 593
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.