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CD109 CD109 molecule [ Microcaecilia unicolor ]

Gene ID: 115467240, updated on 17-Mar-2024

Summary

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Gene symbol
CD109
Gene description
CD109 molecule
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See CD109 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
33
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 3 NC_044033.1 (480038059..480576595)

Chromosome 3 - NC_044033.1Genomic Context describing neighboring genes Neighboring gene CD109 antigen-like Neighboring gene solute carrier family 17 member 5 Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein S13 pseudogene Neighboring gene collagen type XII alpha 1 chain Neighboring gene cytochrome c oxidase subunit 7A2, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044033.1 Chromosome 3 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD109 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044033.1 Reference aMicUni1.1 Primary Assembly

    Range
    480038059..480576595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030199046.1 → XP_030054906.1  CD109 antigen

    UniProtKB/TrEMBL
    A0A6P7XP44
    Conserved Domains (4) summary
    COG2373
    Location:116 → 1109
    YfaS; Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only]
    cd02897
    Location:896 → 1183
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:684 → 775
    A2M; Alpha-2-macroglobulin family
    pfam07677
    Location:1303 → 1387
    A2M_recep; A-macroglobulin receptor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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