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CD109 CD109 molecule [ Neomonachus schauinslandi (Hawaiian monk seal) ]

Gene ID: 110583587, updated on 15-Mar-2024

Summary

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Gene symbol
CD109
Gene description
CD109 molecule
See related
EnsemblRapid:ENSNSCG00000003108
Gene type
protein coding
RefSeq status
MODEL
Organism
Neomonachus schauinslandi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus
Orthologs
human mouse all
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Genomic context

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See CD109 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
34
Annotation release Status Assembly Chr Location
101 current ASM220157v2 (GCF_002201575.2) 8 NC_058410.1 (82545552..82681522, complement)
100 previous assembly ASM220157v1 (GCF_002201575.1) Unplaced Scaffold NW_018734349.1 (82892475..83023934, complement)

Chromosome 8 - NC_058410.1Genomic Context describing neighboring genes Neighboring gene V-type proton ATPase subunit E 1-like Neighboring gene protein SET-like Neighboring gene solute carrier family 17 member 5 Neighboring gene RNA transcription, translation and transport factor protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD109 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neomonachus schauinslandi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM220157v2

Genomic

  1. NC_058410.1 Reference ASM220157v2

    Range
    82545552..82681522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044917212.1 → XP_044773147.1  CD109 antigen

    UniProtKB/TrEMBL
    A0A8M1MH32
    Conserved Domains (2) summary
    COG2373
    Location:153 → 1030
    YfaS; Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only]
    cd02897
    Location:937 → 1224
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
Nucleotide Protein
Heading Accession and Version

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