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CD109 CD109 molecule [ Coturnix japonica (Japanese quail) ]

Gene ID: 107312049, updated on 14-Mar-2024

Summary

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Gene symbol
CD109
Gene description
CD109 molecule
See related
Ensembl:ENSCJPG00005007009
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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See CD109 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
33
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 3 NC_029518.1 (74226739..74298972, complement)

Chromosome 3 - NC_029518.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116653114 Neighboring gene uncharacterized LOC107312039 Neighboring gene solute carrier family 17 member 5 Neighboring gene eukaryotic translation elongation factor 1 alpha 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029518.1 Chromosome 3 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD109 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029518.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    74226739..74298972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015859075.2 → XP_015714561.1  CD109 antigen

    UniProtKB/TrEMBL
    A0A8C2T398
    Related
    ENSCJPP00005007676.1, ENSCJPT00005011815.1
    Conserved Domains (7) summary
    COG2373
    Location:52 → 995
    YfaS; Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only]
    cd02897
    Location:902 → 1189
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:688 → 779
    A2M; Alpha-2-macroglobulin family
    pfam01835
    Location:124 → 215
    A2M_N; MG2 domain
    pfam07677
    Location:1307 → 1391
    A2M_recep; A-macroglobulin receptor
    pfam07678
    Location:954 → 1191
    A2M_comp; A-macroglobulin complement component
    pfam07703
    Location:467 → 592
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region
Nucleotide Protein
Heading Accession and Version

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