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CD109 CD109 molecule [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102034841, updated on 3-Aug-2024

Summary

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Gene symbol
CD109
Gene description
CD109 molecule
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See CD109 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054328.1 (1023732..1094933)

NW_005054328.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 alpha 1 Neighboring gene solute carrier family 17 member 5 Neighboring gene collagen type XII alpha 1 chain Neighboring gene cytochrome c oxidase subunit 7A2, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054328 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD109 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054328.1 Reference GeoFor_1.0

    Range
    1023732..1094933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005421150.2 → XP_005421207.1  CD109 antigen

    UniProtKB/TrEMBL
    A0A6I9HIJ0
    Conserved Domains (4) summary
    COG2373
    Location:49 → 997
    YfaS; Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only]
    cd02897
    Location:904 → 1191
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:690 → 781
    A2M; Alpha-2-macroglobulin family
    pfam07677
    Location:1309 → 1393
    A2M_recep; A-macroglobulin receptor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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