txid205922[Organism] - GEO DataSets - NCBI

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Select item 2000975651.

Divalent cations promote the transfer of the IncP-7 plasmid pCAR1 among different Pseudomonas hosts

(Submitter supplied) An incompatibility P-7 plasmid pCAR1 can be efficiently transferred among artificial microcosms in the presence of divalent cations Ca2+ and Mg2+. One on one mating assays between Pseudomonas strains with different plasmids showed that the promotion of transfer efficiency by divalent cations was also found in other plasmids including pB10 and NAH7, whereas the impacts were larger in IncP-7 plasmids. more...

Organism:: Pseudomonas; Pseudomonas fluorescens Pf0-1; Pseudomonas putida KT2440

Type:: Expression profiling by genome tiling array

Platforms:: GPL6591 GPL8298 GPL8296
24 Samples

Download data: BAR, CEL

Series

Accession:: GSE97565

ID:: 200097565

PubMed Similar studies

Select item 2000396362.

Modulation of primary cell function of host Pseudomonas bacteria by conjugative plasmid pCAR1

(Submitter supplied) Impacts of plasmid carriage on its host cell were comprehensively analyzed using conjugative plasmid pCAR1 in the three different kinds of hosts, Pseudomonas putida KT2440, P. aeruginosa PAO1, and P. fluorescens Pf0-1. Various analyses of the host phenotype showed that pCAR1 carriage reduced host fitness, swimming motility, and resistances to osmotic- or pH-stress, and brought about the alterations of primary metabolic capacities in the TCA cycle or those several steps away from the TCA cycle in the host cells. more...

Organism:: Pseudomonas; Pseudomonas fluorescens; Pseudomonas putida; Pseudomonas aeruginosa; Pseudomonas putida KT2440; Pseudomonas fluorescens Pf0-1; Pseudomonas aeruginosa PAO1

Type:: Expression profiling by genome tiling array

4 related Platforms
36 Samples

Download data: BAR, CEL

Series

Accession:: GSE39636

ID:: 200039636

Select item 2000338653.

Expression analysis of the AdnA regulon in Pseudomonas fluorescens Pf0-1

(Submitter supplied) Investigation of whole genome gene expression AdnA in Pseudomonas fluorescens, an ortholog of FleQ in P. aeruginosa, regulates both motility and flagella-mediated attachment to various surfaces. A whole genome microarray determined the AdnA transcriptome by comparing the gene expression pattern of wild-type Pf0-1 to that of Pf0-2x (adnA-) in broth culture. In the absence of AdnA, expression of 92 genes was decreased, while 11 genes showed increased expression. more...

Organism:: Pseudomonas fluorescens Pf0-1; Pseudomonas fluorescens

Type:: Expression profiling by array

Platform:: GPL14909
4 Samples

Download data: TXT

Series

Accession:: GSE33865

ID:: 200033865

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000306814.

Expression analysis of Pseudomonas fluorescens Pf0-1 (Wt) and delta-pst mutant grown in K10T-1 medium

(Submitter supplied) Whole genome gene expression study comparing Pseudomonas fluorescens Pf0-1 (Wt) relative to a delta-pst mutant (deletion of the pstSCAB operon) that consitutively expresses the Pho regulon Mutants used in this study are further described in Monds, R.D. Newell, P.D., Gross, R.H., O'Toole, G.A. (2007) Phosphate-dependent modulation of c-di-GMP levels regulates Pseudomonas fluorescens Pf0-1 biofilm formation by controlling secretion of the adhesin LapA. more...

Organism:: Pseudomonas fluorescens Pf0-1

Type:: Expression profiling by array

Platform:: GPL13918
4 Samples

Download data: TXT

Series

Accession:: GSE30681

ID:: 200030681

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000152175.

Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1.

(Submitter supplied) Plasmid carriage requires appropriate expression of the genes on the plasmid or host chromosome through cooperative transcriptional regulation. To clarify the impact of plasmid carriage on the host chromosome, we compared the chromosomal RNA maps of plasmid-free and plasmid-containing host strains using the incompatibility group P-7 archetype plasmid pCAR1, which is involved in carbazole degradation, and three distinct Pseudomonas strains. more...

Organism:: Pseudomonas fluorescens Pf0-1; Pseudomonas putida KT2440; Pseudomonas; Pseudomonas aeruginosa PAO1

Type:: Expression profiling by genome tiling array

4 related Platforms
9 Samples

Download data: BAR, CEL

Series

Accession:: GSE15217

ID:: 200015217

PubMed Similar studies

Select item 1000149096.

NimbleGen_Tufts University Pseudomonas fluorescens Pf0-1 373K array

(Submitter supplied) NimbleGen design name 2006-07-27_TI205922_60mer, NimbleGen design ID 4328. Catalog design for Pseudomonas fluorescens PfO-1 (Taxonomy Id: 205922) covering NC_007492. Probes selected for 5736/5736 sequences. Median number of probes/sequence is 13 with an average of 13.00. Each probe will be replicated 5 times on the chip. Probes are randomly distributed over the surface of the array. Unused features have been filled with randomly generated probes of comparable GC content. more...

Organism:: Pseudomonas fluorescens Pf0-1

1 Series
4 Samples

Download data: NDF, NGD

Platform

Accession:: GPL14909

ID:: 100014909

Select item 1000139187.

NimbleGen-Pesudomonas fluorescens Pf0-1-positive match expression array-v1.0 [2007-07-17_GO_P_fluor_expr]

(Submitter supplied) NimbleGen design name: 2007-07-17_GO_P_fluor_expr, NimbleGen design ID: 6074. A perfect match expression design for 5733 annotated open reading frames from Pseudomonas fluorescens, Pf0-1 (Refseq: NC_007492) with twenty 60-mer postive match (PM) probes per gene. Each probe is replicated 3 times. The design includes random GC and other control probes. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. more...

Organism:: Pseudomonas fluorescens Pf0-1

1 Series
4 Samples

Download data: NDF

Platform

Accession:: GPL13918

ID:: 100013918

Select item 1000082988.

Pseudomonas fluorescens Pf0-1 chromosome array

(Submitter supplied) This is an Affymetrix custom-commercial tiling array that covers thePseudomonas fluorescens Pf0-1 chromosome (RefSeq: NC_007492) at 11-bp density. BPMAP files are provided as supplementary files. PFO1b520543F-3-FWD.bpmap represents the forward strand of Pf0-1 chromosome, and PFO1b520543F-3-REV.bpmap represents the reverse strand of Pf0-1 chromosome. Protocol: See manufacturer's web site.

Organism:: Pseudomonas fluorescens Pf0-1

3 Series
18 Samples

Download data: BPMAP

Platform

Accession:: GPL8298

ID:: 100008298

Select item 3025722219.

PF-KT_PF_without_cation_2

Organism:: Pseudomonas putida KT2440; Pseudomonas fluorescens Pf0-1

Source name:: cDNA prepared from Pf0-1(pCAR1) and KT2440 incubated in CF buffer without cation

Platform:: GPL8298
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572221

ID:: 302572221

Select item 30257222010.

PF-KT_PF_without_cation_1

Organism:: Pseudomonas putida KT2440; Pseudomonas fluorescens Pf0-1

Source name:: cDNA prepared from Pf0-1(pCAR1) and KT2440 incubated in CF buffer without cation

Platform:: GPL8298
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572220

ID:: 302572220

Select item 30257221911.

PF-KT_PF_with_cation_2

Organism:: Pseudomonas putida KT2440; Pseudomonas fluorescens Pf0-1

Source name:: cDNA prepared from Pf0-1(pCAR1) and KT2440 incubated in CF buffer with cation

Platform:: GPL8298
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572219

ID:: 302572219

Select item 30257221812.

PF-KT_PF_with_cation_1

Organism:: Pseudomonas fluorescens Pf0-1; Pseudomonas putida KT2440

Source name:: cDNA prepared from Pf0-1(pCAR1) and KT2440 incubated in CF buffer with cation

Platform:: GPL8298
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572218

ID:: 302572218

Select item 30257221713.

PF_PF_without_cation_2

Organism:: Pseudomonas fluorescens Pf0-1

Source name:: cDNA prepared from Pf0-1(pCAR1) incubated in CF buffer without cation

Platform:: GPL8298
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572217

ID:: 302572217

Select item 30257221614.

PF_PF_without_cation_1

Organism:: Pseudomonas fluorescens Pf0-1

Source name:: cDNA prepared from Pf0-1(pCAR1) incubated in CF buffer without cation

Platform:: GPL8298
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572216

ID:: 302572216

Select item 30257221515.

PF_PF_with_cation_2

Organism:: Pseudomonas fluorescens Pf0-1

Source name:: cDNA prepared from Pf0-1(pCAR1) incubated in CF buffer with cation

Platform:: GPL8298
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572215

ID:: 302572215

Select item 30257221416.

PF_PF_with_cation_1

Organism:: Pseudomonas fluorescens Pf0-1

Source name:: cDNA prepared from Pf0-1(pCAR1) incubated in CF buffer with cation

Platform:: GPL8298
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572214

ID:: 302572214

Select item 30257222917.

PF-KT_pCAR1_without_cation_2

Organism:: Pseudomonas putida KT2440; Pseudomonas fluorescens Pf0-1

Source name:: cDNA prepared from Pf0-1(pCAR1) and KT2440 incubated in CF buffer without cation

Platform:: GPL6591
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572229

ID:: 302572229

Select item 30257222818.

PF-KT_pCAR1_without_cation_1

Organism:: Pseudomonas putida KT2440; Pseudomonas fluorescens Pf0-1

Source name:: cDNA prepared from Pf0-1(pCAR1) and KT2440 incubated in CF buffer without cation

Platform:: GPL6591
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572228

ID:: 302572228

Select item 30257222719.

PF-KT_pCAR1_with_cation_2

Organism:: Pseudomonas putida KT2440; Pseudomonas fluorescens Pf0-1

Source name:: cDNA prepared from Pf0-1(pCAR1) and KT2440 incubated in CF buffer with cation

Platform:: GPL6591
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572227

ID:: 302572227

Select item 30257222620.

PF-KT_pCAR1_with_cation_1

Organism:: Pseudomonas fluorescens Pf0-1; Pseudomonas putida KT2440

Source name:: cDNA prepared from Pf0-1(pCAR1) and KT2440 incubated in CF buffer with cation

Platform:: GPL6591
Series:: GSE97565

Download data: BAR, CEL

Sample

Accession:: GSM2572226

ID:: 302572226

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txid205922[Organism] (37)
GEO DataSets
Limosilactobacillus fermentum strain CAU6113 16S ribosomal RNA gene, partial seq...
Limosilactobacillus fermentum strain CAU6113 16S ribosomal RNA gene, partial sequence
gi|1214568283|gb|MF429767.1|

Nucleotide
Enterococcus faecalis strain CAU2869 16S ribosomal RNA gene, partial sequence
Enterococcus faecalis strain CAU2869 16S ribosomal RNA gene, partial sequence
gi|1214568281|gb|MF429765.1|

Nucleotide
large ribosomal subunit protein bL9m isoform 2 [Homo sapiens]
large ribosomal subunit protein bL9m isoform 2 [Homo sapiens]
gi|663429590|ref|NP_001287662.1|

Protein

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