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| Status |
Public on Dec 25, 2009 |
| Title |
[KT2440b520511F] Pseudomonas putida KT2440 chromosome Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Pseudomonas putida KT2440 |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
See manufacturer's web site.
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| Description |
This is an Affymetrix custom-commercial tiling array that covers thePseudomonas putida KT2440 chromosome (RefSeq: NC_002947) at 11-bp density. BPMAP files are provided as supplementary files. KT2440b520511FF-3.bpmap represents the forward strand of KT2440 chromosome, and KT2440b520511FR-3.bpmap represents the reverse strand of KT2440 chromosome.
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| Submission date |
Mar 13, 2009 |
| Last update date |
Dec 10, 2013 |
| Contact name |
Hideaki Nojiri |
| E-mail(s) |
anojiri@mail.ecc.u-tokyo.ac.jp
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| Phone |
+81-3-5841-3067
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| Organization name |
The University of Tokyo
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| Department |
Biotechnology Research Center
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| Lab |
Laboratory of Environmental Biochemistry
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| Street address |
1-1-1 Yayoi, Bunkyo-ku
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| City |
Tokyo |
| ZIP/Postal code |
113-8657 |
| Country |
Japan |
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| Samples (74)
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GSM380025, GSM380026, GSM546282, GSM546286, GSM546287, GSM973482
GSM973483, GSM973484, GSM973485, GSM973486, GSM973487, GSM973488, GSM973489, GSM1281596, GSM1281597, GSM1281598, GSM1281599, GSM1281600, GSM1281601, GSM1370268, GSM1370269, GSM1370270, GSM1370271, GSM1867043, GSM1867044, GSM1867045, GSM1867046, GSM1867047, GSM1867048, GSM1867049, GSM1867050, GSM1867051, GSM2341996, GSM2341997, GSM2572206, GSM2572207, GSM2572208, GSM2572209, GSM2572210, GSM2572211, GSM2572212, GSM2572213, GSM3015476, GSM3015477, GSM3015478, GSM3015479, GSM3015480, GSM3015481, GSM3015482, GSM3015483, GSM3015484, GSM3015485, GSM3015486, GSM3015487, GSM3015488, GSM3015489, GSM3015490, GSM3015491, GSM3015492, GSM3015493, GSM3015494, GSM3015495, GSM3015496, GSM3015497, GSM3015498, GSM3015499, GSM3015500, GSM3015501, GSM3015502, GSM3015503, GSM3015504, GSM3015505, GSM3015506, GSM3015507
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| Series (11)
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| GSE15217 |
Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1. |
| GSE21968 |
Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function |
| GSE39636 |
Modulation of primary cell function of host Pseudomonas bacteria by conjugative plasmid pCAR1 |
| GSE53067 |
Cooperative function of the three different kinds of nucleoid-associated proteins encoded on the IncP-7 plasmid pCAR1 [KT2440 chromosome chip] |
| GSE53069 |
Cooperative function of the three different kinds of nucleoid-associated proteins encoded on the IncP-7 plasmid pCAR1 |
| GSE56856 |
Effects of carbazole-degradative plasmid pCAR1 on biofilm morphology in three Pseudomonas strains. |
| GSE72637 |
MvaT family proteins encoded on IncP-7 plasmid pCAR1 and the host chromosome regulate host transcriptome cooperatively but differently (KT2440) |
| GSE72639 |
MvaT family proteins encoded on IncP-7 plasmid pCAR1 and the host chromosome regulate host transcriptome cooperatively but differently |
| GSE87863 |
The genome-wide transcriptional response to light in Pseudomonas putida KT2440 |
| GSE97565 |
Divalent cations promote the transfer of the IncP-7 plasmid pCAR1 among different Pseudomonas hosts |
| GSE110733 |
Iron acquisition system and cell shape of host bacteria commonly respond to the carriage of three plasmids belonging to different incompatibility groups. |
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| Supplementary file |
Size |
Download |
File type/resource |
| GPL8296_KT2440b520511FF-3.bpmap.gz |
10.1 Mb |
(ftp)(http) |
BPMAP |
| GPL8296_KT2440b520511FR-3.bpmap.gz |
10.1 Mb |
(ftp)(http) |
BPMAP |
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