GEO DataSets

(Submitter supplied) We analyzed the impact of different phosphate levels on the regulation of plant and fungal transcriptomes.

Organism:

Populus trichocarpa; Rhizophagus irregularis; Sorghum bicolor

Type:

Expression profiling by high throughput sequencing

5 related Platforms

27 Samples

Download data: CSV, TXT

(Submitter supplied) Plant species posses a special set of genes functional only in arbuscular mycorrhizal symbiosis. So, the model plant Medicago truncatula (Jemalong 5) was used for transcriptome comparative analysis while infected with compatible rhizobia Sinorhizobium meliloti (strain 10) and with or without arbuscular mycorrhizal fungus Rhizophagus irregularis (SYM5). Whole shoot and whole root were used for RNA isolation and processed via one of the European certified Affymetrix core labs (http://core.img.cas.cz).

Organism:

Sinorhizobium meliloti; Medicago sativa; Medicago truncatula

Type:

Expression profiling by array

Platform:

GPL4652

12 Samples

Download data: CEL, CHP

(Submitter supplied) The influence of arbuscular mycorrhizal (AM) colonization on the expression of genes in the roots of wheat (Triticum aestivum L.) at the transcriptome level is largely unknown. A pot experiment was established to study the responses of the transcriptome profile in the roots of wheat to colonization by the AM fungus Rhizophagus irregularis using high through-put sequencing methods. The results indicated that the expression of 11,746 genes was regulated by AM colonization, and 64.7% of them were up-regulated genes. more...

Organism:

Triticum aestivum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL10467

6 Samples

Download data: TXT

(Submitter supplied) Arbuscular mycorrhizal fungi arguably form the most successful and wide-spread endosymbiosis with plants. In general terms there is very little host-specificity in this interaction, indicating an extremely broad compatibility. However, host preferences as well as varying symbiotic efficiencies have been observed, the molecular basis of which is still largely unknown. Secreted proteins (SPs) may act as fungal effectors to control symbiotic efficiency in a host-dependent manner. more...

Organism:

Rhizophagus irregularis

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL19734 GPL23542

18 Samples

Download data: XLSX

(Submitter supplied) Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree health and growth. A complete molecular understanding of these interactions will have important implications for increasing agricultural or forestry sustainability using plant:microbe-based strategies. These beneficial associations entail extensive morphological changes orchestrated by the genetic reprogramming in both organisms. more...

Organism:

Populus deltoides; Populus trichocarpa

Type:

Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL25333 GPL25334

18 Samples

Download data: FA, TXT