Similar studies for GEO DataSets (Select 200017441) - GEO DataSets

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Items: 12

Select item 2000174411.

E. coli imp fabI(G93V) Mutant Cells: Control (E. coli imp fabI(G93V) ) vs. NTG-treated E. coli imp fabI(G93V)

(Submitter supplied) Transcriptional profiling of NTG-treated E. coli imp fabI(G93V) cells compared to control cells (E. coli imp fabI(G93V) ) in the absence or presence of sub-lethal concentration of triclosan.

Organism:: Escherichia coli

Type:: Expression profiling by array

Platform:: GPL5482
2 Samples

Download data: TXT

Series

Accession:: GSE17441

ID:: 200017441

Select item 2000057992.

S_aureus_&_triclosan

(Submitter supplied) A triclosan-ciprofloxacin cross-resistant mutant strain of Staphylococcus aureus displays an alteration in the expression of several cell membrane structural and functional genes. Triclosan is an antimicrobial agent found in many consumer products. Several studies have demonstrated that triclosan inhibits the bacterial fatty acid biosynthetic enzyme, enoyl-ACP reductase (FabI). Studies have also demonstrated that decreased susceptibility to triclosan correlates with ciprofloxacin resistance in several bacteria. more...

Organism:: Staphylococcus aureus

Type:: Expression profiling by array

Dataset:: GDS3136
Platform:: GPL1339
12 Samples

Download data: CEL

Series

Accession:: GSE5799

ID:: 200005799

Select item 31363.

Triclosan-ciprofloxacin cross-resistant Staphylococcus aureus mutant response to triclosan

Analysis of Staphylococcus aureus JJ5 mutant strain treated with triclosan. JJ5 is a triclosan-ciprofloxacin cross-resistant strain. Triclosan resistance correlates with ciprofloxacin resistance in several bacteria. Results provide insight into the molecular basis of triclosan resistance in JJ5.

Organism:: Staphylococcus aureus

Type:: Expression profiling by array, count, 2 agent, 2 strain sets

Platform:: GPL1339
Series:: GSE5799
12 Samples

Download data: CEL

DataSet

Accession:: GDS3136

ID:: 3136

Select item 2000393434.

Gene expression of triclosan susceptible and tolerant E. coli O157:H19 in response to triclosan exposure

(Submitter supplied) Triclosan is a biocidal active agent commonly found in domestic cleaning products, hand sanitizers, cosmetics and personal care products. It is used to control microbial contamination and has a broad-spectrum of activity against many Gram-positive and Gram-negative bacteria. The development of triclosan tolerance with potential cross resistance to clinically relevant antibiotics in zoonotic pathogens is of concern given the widespread use of this active agent in clinical, food processing and domestic environments. more...

Organism:: Escherichia coli; Escherichia coli O157

Type:: Expression profiling by array

Platform:: GPL3154
12 Samples

Download data: CEL

Series

Accession:: GSE39343

ID:: 200039343

Select item 2000088615.

Microarray Analysis of Toxicogenomic Effects of Triclosan on Staphylococcus aureus

(Submitter supplied) In the present study, we employed Affymetrix Staphylococcus aureus GeneChip arrays to investigate the dynamics of global gene expression profiles during the cellular response of Staphylococcus aureus to triclosan, which involved initial growth inhibition and metabolism. Keywords: Transcriptome study; antimicrobial response; time course

Organism:: Staphylococcus aureus

Type:: Expression profiling by array

Dataset:: GDS2983
Platform:: GPL1339
15 Samples

Download data: CEL

Series

Accession:: GSE8861

ID:: 200008861

Select item 29836.

Triclosan effect on Staphylococcus aureus: time course

Analysis of Staphylococcus aureus cultures treated for 10 or 60 minutes with 0.05 uM triclosan. At this concentration, the antimicrobial agent caused growth inhibition for about 10 min. Results provide insight into the initial molecular response of Staphylococcus aureus to triclosan.

Organism:: Staphylococcus aureus

Type:: Expression profiling by array, count, 2 agent, 3 time sets

Platform:: GPL1339
Series:: GSE8861
15 Samples

Download data: CEL

DataSet

Accession:: GDS2983

ID:: 2983

Select item 2000179917.

High succinic acid tolerance E.coli (DST160)

(Submitter supplied) To understand cell responses against high succinate stress, a continuous culture was performed for 9 months using a wild Escherichia coli under gradually increasing succinate stress. The final adapted strain against high succinate stress, named DST160, was able to grow with no lag phase in medium containing 1.35 M of succinate stress while wild W3110 showed more than 38 h lag phase. The maximum growth rate and growth yield of DST160 under the stress condition were 0.20 h-1 and 0.192 g-cell/g-glucose, which were 53.8 % and 12.3 % higher than those of W3110 (0.13 h-1 and 0.171 g-cell/g-glucose, respectively).

Organism:: Escherichia coli; Escherichia coli str. K-12 substr. W3110

Type:: Expression profiling by array

Platform:: GPL5482
2 Samples

Download data: GPR

Series

Accession:: GSE17991

ID:: 200017991

Select item 2000873988.

Multi-omics approach to study global changes in a triclosan mutant strain of Acinetobacter baumannii ATCC 17978.

(Submitter supplied) Acinetobacter baumannii AB042, a triclosan-resistant mutant, was examined for modulated gene expression using whole genome sequencing, transcriptomics, and proteomics in order to understand the mechanism of triclosan-resistance as well as its impact on A. Baumannii.

Organism:: Acinetobacter baumannii ATCC 17978

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22492
4 Samples

Download data: DIFF, TXT, XLSX

Series

Accession:: GSE87398

ID:: 200087398

PubMed Similar studies SRA Run Selector

Select item 2001070489.

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and mutant E. coli K-12 MG1655 Transcriptomes

(Submitter supplied) The goals of this study are to use Next-generation sequencing (NGS) to detect bacterial mRNA profiles of wild-type E. coli K-12 MG1655 and triclosan induced E. coli mutants in response to 0.2 mg/L triclosan for 8 h, in triplicate, using Illumina HiSeq 2500.The NGS QC toolkit (version 2.3.3) was used to treat the raw sequence reads to trim the 3’-end residual adaptors and primers, and the ambiguous characters in the reads were removed. more...

Organism:: Escherichia coli str. K-12 substr. MG1655

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18956
12 Samples

Download data: TXT

Series

Accession:: GSE107048

ID:: 200107048

PubMed Similar studies SRA Run Selector

Select item 20001505910.

The transcriptomic response of E. coli to triclosan exposure

(Submitter supplied) The gene expression profile of E. coli K-12 MG1655 grown in minimal medium treated with 0.12 mg/L of the biocide triclosan has been analysed using whole genome oligonucleotide microarrays. "Control" RNA was isolated from three independently grown 50ml MOPS minimal media cultures of E. coli K-12 MG1655. “Test” RNA was isolated from three independently grown 50ml MOPS minimal cultures of E. coli K-12 MG1655, to which was added 0.12 mg/L of triclosan after reaching mid-logarithmic growth phase (OD600 ~ 0.7 +/- 0.02). more...

Organism:: Escherichia coli

Type:: Expression profiling by array

Platform:: GPL3051
3 Samples

Download data: GPR

Series

Accession:: GSE15059

ID:: 200015059

Select item 20001618911.

Toxicogenomic response of Rhodospirillum rubrum S1H to the model micropollutant triclosan

(Submitter supplied) Aiming at the development of a micropollutant biosensor in the frame of the Micro-Ecological Life Support System Alternative (MELiSSA), a pilot study was initiated to identify triclosan (TCS)-responsive biomarker genes in the MELiSSA carbon-mineralizing microorganism, Rhodospirillum rubrum S1H. TCS is a biocide, commonly found in human excrements and is considered an emerging pollutant in wastewater and the environment. more...

Organism:: Rhodospirillum rubrum ATCC 11170; Rhodospirillum rubrum

Type:: Expression profiling by array

Platform:: GPL7256
2 Samples

Download data: GPR

Series

Accession:: GSE16189

ID:: 200016189

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20001426512.

Rhodospirillum rubrum S1H Space Flight Experiments

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Rhodospirillum rubrum; Rhodospirillum rubrum ATCC 11170

Type:: Expression profiling by array

Platform:: GPL7256
6 Samples

Download data: GPR

Series

Accession:: GSE14265

ID:: 200014265

PubMed Full text in PMC Similar studies Analyze with GEO2R

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Similar studies for GEO DataSets (Select 200017441) (12)
GEO DataSets
component of the germination receptor GerAC [Bacillus subtilis subsp. subtilis 6...
component of the germination receptor GerAC [Bacillus subtilis subsp. subtilis 6051-HGW]
gi|470163525|gnl|REF_goetting|BSU60 070|ref|YP_007535300.1|

Protein
cysteine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes S85]
cysteine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes S85]
gi|385790116|ref|YP_005821239.1|

Protein
kinesin-like protein-related [Plasmodium yoelii yoelii]
kinesin-like protein-related [Plasmodium yoelii yoelii]
gi|23489919|gb|EAA21814.1||gnl|WGS: PY02372

Protein

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