GEO DataSets

(Submitter supplied) cDNA microarrays have been shown to be useful for monitoring global gene expression patterns in normal and disease states and in response to various environmental stimuli. In this study we have used a cattle cDNA microarray containing 7653 elements to analyze expression profiles in 19 different cattle tissues. Signal intensities from all tissue sample RNAs were compared to a reference standard RNA created from different tissues and cell lines. more...

Organism:

Bos taurus

Type:

Expression profiling by array

Platform:

GPL2672

39 Samples

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(Submitter supplied) Gene expression patterns of bovine placenta from initial to late stage of pregnancy were investigated by using the our custom designed utero-placental cDNA microarray. Keywords: Time course

Organism:

Bos taurus

Type:

Expression profiling by array

Platform:

GPL1221

18 Samples

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(Submitter supplied) We used this array as described in Babak, Blencowe, anf Hughes (2005), to screen novel ncRNA predictions. See author supplementary data for more detailed probe information. Keywords: parallel sample

Organism:

Mus musculus

Type:

Non-coding RNA profiling by array

Platform:

GPL1896

16 Samples

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(Submitter supplied) four biological replicates of arabidopsis accession columbia 78h old whole seedling expression data Keywords: exon/intergenic comparison

Organism:

Arabidopsis thaliana

Type:

Expression profiling by genome tiling array

Platform:

GPL1979

4 Samples

Download data: CEL

(Submitter supplied) This cDNA clone set was prepared by researchers at the National Institute on Aging. The clone set has been distributed widely and is currently in use by a number of other microarray programmes. The set has the following characteristics: ~ 15,000 'unique' cDNA clones were rearrayed from 52,374 ESTs from pre- and periimplantation embryos, E12.5 female gonad/mesonephros, and newborn ovary. Up to 50% are derived from novel genes. more...

Organism:

Mus musculus

2 Series

8 Samples

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(Submitter supplied) HGMP printed NIA 15K arrays, printed on 2 slides, 17280 spots per slide, including control spots, empties and landmarks. 2 duplicate spots per slide for each clone. Earlier versions of these slides have already been described by platform entries GPL5457 and GPL5458. However, owing to analysis of a later array print run by a different image analysis programme in this series of experiments, the data files present in a different clone order and it is impossible to sort them to generate the same order. more...

Organism:

Mus musculus

1 Series

18 Samples

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(Submitter supplied) Second slide of 2. HGMP printed NIA 15K set, over 2 slides, 17280 spots per slide, including empties, control spots, landmark spots, and duplicate experimental spots. 12 rows and 4 columns of grids, each grid contains 18 rows and 20 columns of spots (format for both slides 1-20 and 21-40). Protocol: cDNA arrays (now discontinued), spotted PCR product. Bacterial source material diluted 1/10 prior to PCR, primers: Ko forward primer (amidated): GTG TGG AAT TGT GAG CGG ATA ACA A (25mer) with 5' NH2(C6) modification. more...

Organism:

Mus musculus

1 Series

10 Samples

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(Submitter supplied) HGMP printed NIA 15K arrays, printed on 2 slides, 17280 spots per slide, including control spots, empties and landmarks. 2 duplicate spots per slide for each clone. This is the platform submission for Slide 1 Protocol: cDNA arrays (now discontinued), spotted PCR product. Bacterial source material diluted 1/10 prior to PCR, primers: Ko forward primer (amidated): GTG TGG AAT TGT GAG CGG ATA ACA A (25mer) with 5' NH2(C6) modification. more...

Organism:

Mus musculus

1 Series

10 Samples

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(Submitter supplied) cDNA array created by amplification of the National Institute of Aging 15K clone set. All clones were PCR amplified using M13 forward and reverse primers, cleaned with millipore filter plates and printed in 3xSSC and 1.5M betaine with a Genomic Solutions OmniGrid 100 robot. Arrays were printed on Corning GAPSII amino coated slides. 32 Spalax sequences were added to the array.

Organism:

Mus musculus; Nannospalax ehrenbergi

1 Series

12 Samples

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(Submitter supplied) Custom array including the NIA Mouse 15K Cloneset plus addition unidentified clones Keywords = Mouse NIA 15K Arizona

Organism:

Mus musculus

2 DataSets

2 Series

24 Samples

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(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Equus caballus

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL10300 GPL10443

16 Samples

Download data: WIG

(Submitter supplied) Sequencing of equine mRNA (RNA-seq) identified 428 putative transcripts which do not map to any previously annotated or predicted horse genes. Most of these encode the equine homologs of known protein-coding genes described in other species, yet the potential exists to identify novel and perhaps equine-specific gene structures. A set of 36 transcripts were prioritized for further study by filtering for levels of expression (depth of RNA-seq read coverage), distance from annotated features in the equine genome, the number of putative exons, and patterns of gene expression between tissues. more...

Organism:

Equus caballus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL10300

8 Samples

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(Submitter supplied) The horse, like a majority of animal species, has a limited amount of species-specific expressed sequence data available in public databases. As a result, structural models for a majority of genes defined in the equine genome are predictions based on ab initio sequence analysis or the projection of gene structures from other mammalian species. The current study used Illumina-based sequencing of messenger RNA (RNA-seq) to help refine structural annotation of equine protein-coding genes and for a preliminary assessment of gene expression patterns. more...

Organism:

Equus caballus

Type:

Expression profiling by high throughput sequencing

Platform:

GPL10443

8 Samples

Download data: TXT, WIG

(Submitter supplied) Array hybridizations profiling diverse human tissues; for each array the human tissue RNA is hybridized against a universal reference RNA. Experiments 1-3 are replicates of universal reference RNA vs. genomic DNA hybridizations, used to estimate transcript abundance. Arrays 4-8 are tissue RNA vs. genomic DNA hybridizations, carried out to evaluate the method for estimating transcript abundance (see manuscript for details). more...

Organism:

Homo sapiens

Type:

Expression profiling by array

Platform:

GPL1827

8 Samples

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(Submitter supplied) Array hybridizations profiling diverse human tissues; for each array the human tissue RNA is hybridized against a universal reference RNA. Series_type: Logical set Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Keywords: other

Organism:

Homo sapiens

Type:

Expression profiling by array

Datasets:

GDS1085 GDS1088

5 related Platforms

123 Samples

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Expression profiling of 115 samples from 35 different types of normal tissues. Samples obtained by surgery or autopsy, and evaluated by pathologists. Results provide insight into the molecular organization of diverse cell types, and provide a baseline for comparison to diseased tissues.

Organism:

Homo sapiens

Type:

Expression profiling by array, log ratio, 4 tissue sets

Platform:

GPL1826

Series:

GSE2193

11 Samples

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Expression profiling of 115 samples from 35 different types of normal tissues. Samples obtained by surgery or autopsy, and evaluated by pathologists. Results provide insight into the molecular organization of diverse cell types, and provide a baseline for comparison to diseased tissues.

Organism:

Homo sapiens

Type:

Expression profiling by array, log ratio, 20 tissue sets

Platform:

GPL1823

Series:

GSE2193

35 Samples

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(Submitter supplied) In this study we exploited next-generation Illumina sequencing technology (Wang et al., 2009) to refine the current annotation of the KT2440 genome. Transcriptome sequencing data were queried for yet undescribed small RNAs and ORFs and employed to validate predicted operons and gene coordinates. Expression profiles were measured at 10°C and 30°C to cover the physiologic temperature profile of this mesophilic bacterium. more...

Organism:

Pseudomonas putida KT2440

Type:

Expression profiling by array; Expression profiling by high throughput sequencing

Platforms:

GPL10932 GPL10933 GPL10934

9 Samples

Download data: BED, CEL, TXT

(Submitter supplied) We used Progenika oligonucleotide arrays to monitore the gene expression of P. putida after a cold shock from 30°C to 10°C

Organism:

Pseudomonas putida KT2440

Type:

Expression profiling by array

Platform:

GPL10933

1 Sample

Download data: TXT

(Submitter supplied) We used Affymetrix microarrays to monitore the gene expression of P. putida after a cold shock from 30°C to 10°C

Organism:

Pseudomonas putida KT2440

Type:

Expression profiling by array

Platform:

GPL10932

6 Samples

Download data: CEL, TXT