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Links from GEO DataSets

Items: 20

1.

URGV Arabidopsis thaliana 25K CATMA_v2.2

(Submitter supplied) Corning Ultra-GAPS (TM) slides are spotted with 64 pins (8x8) therefore the spotted area is divided into 3 metablocks, each containning 64 blocks of 144 spots (12x12) Protocol: A.thaliana genes were predicted with Eugene software (Foissac S. et al., Nucleic Acids Res., 2003) and gene-specific sequence tags were automatically designed (Thareau et al. Bioinformatics, 2003 Nov 22). Two rounds of PCR were performed and PCR products were finally purified and dissolved in 50% DMSO in TE at concentrations ranging between 50-200ng/ul and re-arrayed in 1536 microtiter plates. more...
Organism:
Arabidopsis thaliana
95 Series
1171 Samples
Download data
Platform
Accession:
GPL4346
ID:
100004346
2.

Expression in Intergenic Regions

(Submitter supplied) Contains a row for each intergenic region in each sample, indicating whether our analysis called a window within the region "present" or "absent" in the sample. Intergenic regions are regions containing neither annotated genes nor intergenic clusters. Region coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163). Keywords: other
Organism:
Arabidopsis thaliana
Type:
Expression profiling by genome tiling array
16 related Platforms
72 Samples
Download data
Series
Accession:
GSE639
ID:
200000639
3.

Expression of Intergenic Clusters

(Submitter supplied) Contains a row for each intergenic cluster in each sample, indicating whether our analysis called the cluster "present" or "absent" in the sample. Intergenic clusters are novel (unannotated) genes detected by aligning Arabidopsis cDNAs/ESTs to the genome. Cluster coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163). more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by genome tiling array
16 related Platforms
72 Samples
Download data
Series
Accession:
GSE638
ID:
200000638
4.

Antisense Expression of Annotated Genes

(Submitter supplied) Contains a row for each annotated gene in each sample, indicating whether our analysis called the region antisense to the coding region of the gene "present" or "absent" in the sample. Gene names and coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163). Keywords: other
Organism:
Arabidopsis thaliana
Type:
Expression profiling by genome tiling array
16 related Platforms
72 Samples
Download data
Series
Accession:
GSE637
ID:
200000637
5.

Expression of Annotated Genes

(Submitter supplied) Contains a row for each annotated gene in each sample, indicating whether our analysis called the gene "present" or "absent" in the sample. Gene names and coordinates refer to version 3 of the TIGR annotation as submitted to GenBank (GI numbers 22330780, 22326553, 22331929, 22329272, 22328163). Keywords: other
Organism:
Arabidopsis thaliana
Type:
Expression profiling by genome tiling array
16 related Platforms
72 Samples
Download data
Series
Accession:
GSE636
ID:
200000636
6.

Identification of new full length Arabidopsis genes - whole genome arrays

(Submitter supplied) Identification of new and unpredicted full length Arabidopsis genes. Examination of cRNA prepared from Arabidopsis thaliana ecotype Columbia light grown 7-day old seedlings using whole genome tiling arrays. Keywords: other
Organism:
Arabidopsis thaliana
Type:
Expression profiling by genome tiling array
12 related Platforms
12 Samples
Download data
Series
Accession:
GSE605
ID:
200000605
7.

Identification of new full length Arabidopsis genes - pilot arrays

(Submitter supplied) Identification of new and unpredicted full length Arabidopsis genes. Examination of cRNA prepared from Arabidopsis thaliana ecotype Columbia light grown 7-day old seedlings, light grown 7-day old seedlings treated at 4 degrees C for 24hrs, and etiolated 7-day old seedlings using pilot genome tiling arrays. Total RNA was isolated from seedlings with the TRIzol reagent procedure of Invitrogen, then poly(A)+ RNA was purified with Qiagen oligotex. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by genome tiling array
4 related Platforms
12 Samples
Download data
Series
Accession:
GSE604
ID:
200000604
8.

Identification of new and unpredicted full length Arabidopsis genes

(Submitter supplied) Examination of cRNA from Arabidopsis flowers, roots and suspension cell culture using custom high-density Affymetrix genome tiling arrays in order to identify new and unpredicted genes. Keywords: other
Organism:
Arabidopsis thaliana
Type:
Expression profiling by genome tiling array
16 related Platforms
48 Samples
Download data
Series
Accession:
GSE601
ID:
200000601
9.

Arabidopsis microarrays identify conserved and differentially-expressed genes involved in shoot grow

(Submitter supplied) Expressed sequence tags (EST)-based microarrays are powerful tools for gene discovery and signal transduction studies in a small number of well-characterized species. To explore the usefulness of this technique for poorly characterized species, we have hybridized the 11 522-element Arabidopsis microarrays with labeled cDNAs from mature leaf and shoot apices from several different species. Expression of 23 to 47% of the genes on the array was detected, demonstrating that a large number of genes from distantly related species can be surveyed on Arabidopsis arrays. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Platforms:
GPL3225 GPL3226 GPL3227
8 Samples
Download data
Series
Accession:
GSE3724
ID:
200003724
10.

Arabidopsis Whole Genome 36-mer

(Submitter supplied) Identification of novel transcribed sequences in Arabidopsis thaliana using high density genome tiling arrays. Keywords: other
Organism:
Arabidopsis thaliana
Type:
Expression profiling by genome tiling array
13 related Platforms
13 Samples
Download data
Series
Accession:
GSE2247
ID:
200002247
11.

Arborea spruce 11K cDNA microarray

(Submitter supplied) The 11K microarray was designed based on the white spruce (Picea gluca [Moench.] Voss) expressed sequence tag (EST) assembly. This assembly comprised 16600 unique contigs sequenced from 17 cDNA libraries, which represented different tissues at a diverse developmental stages and growing conditions. 10400 nonredundant sequences were selected and printed as double, side-by-side on the microarray slide with 4X12 subgrid layout and 132 spots per subgrid. more...
Organism:
Picea glauca
2 Series
30 Samples
Download data
Platform
Accession:
GPL10754
ID:
100010754
12.

Arabidopsis shoot apices dissection

(Submitter supplied) Comparisin of short day and long day growth conditions for wild-type Arabidopsis seeds (ecotype Col-0). Keywords: other
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Dataset:
GDS415
Platform:
GPL198
4 Samples
Download data
Series
Accession:
GSE538
ID:
200000538
13.

Seedling ethylene treatment

(Submitter supplied) Effect of ethylene treatment on wild-type Arabidopsis seedlings (ecotype Col-0). Keywords: other
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Dataset:
GDS414
Platform:
GPL198
8 Samples
Download data
Series
Accession:
GSE537
ID:
200000537
14.
Full record GDS415

Photoperiodic gene expression

Comparison of short day and long day growth conditions in adult wild type Columbia-0 Arabidopsis apices. Plants grown under short day conditions for 30 days then shifted to long day for 0 or 7 days.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array, count, 2 growth protocol sets
Platform:
GPL198
Series:
GSE538
4 Samples
Download data
DataSet
Accession:
GDS415
ID:
415
15.
Full record GDS414

Ethylene treatment in seedlings

Effect of ethylene treatment on 3 day old etiolated wild type Columbia-0 Arabidopsis seedlings.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array, count, 2 agent sets
Platform:
GPL198
Series:
GSE537
8 Samples
Download data
DataSet
Accession:
GDS414
ID:
414
16.

Differentially expressed genes in developing seeds of Arabidopsis thaliana accessions Col-0 and C24 - Impact of polymorphic probes on the detection of differentially expressed genes

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Platform:
GPL198
36 Samples
Download data: CEL
Series
Accession:
GSE94764
ID:
200094764
17.

Differentially expressed genes in developing seeds of Arabidopsis thaliana accessions Col-0 and C24 - Impact of the exclusion of polymorphic probes via a sequence-based approach

(Submitter supplied) In order to identify differentially expressed genes in developing seeds of Arabidopsis thaliana three different stages of seed development were analysed (9-10, 10-11 and 12-13 days after flower opening) for two Arabidopsis thaliana accessions, Col-0 and C24. For each stage and accession three biological replicates were analysed.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Platform:
GPL198
18 Samples
Download data: CEL
Series
Accession:
GSE94763
ID:
200094763
18.

Differentially expressed genes in developing seeds of Arabidopsis thaliana accessions Col-0 and C24

(Submitter supplied) In order to identify differentially expressed genes in developing seeds of Arabidopsis thaliana three different stages of seed development were analysed (9-10, 10-11 and 12-13 days after flower opening) for two Arabidopsis thaliana accessions, Col-0 and C24. For each stage and accession three biological replicates were analysed.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Platform:
GPL198
18 Samples
Download data: CEL
Series
Accession:
GSE94762
ID:
200094762
19.

Arabidopsis thaliana 9.9k 70-mer spotted oligoprobes

(Submitter supplied) This oligonucleotide array is produced from the Operon Version 1.0 Array-Ready Oligo set (AROS). The 70-mer oligo was designed from the 3'-end of 26,090 annotated genes. Every 70-mer oligo is spotted once on each slide.
Organism:
Arabidopsis thaliana
1 Series
1 Sample
Download data
Platform
Accession:
GPL7633
ID:
100007633
20.

Arabidopsis thaliana 8.4k 70-mer spotted oligoprobes

(Submitter supplied) This oligonucleotide array is produced from the Operon Version 1.0 Array-Ready Oligo set (AROS). The 70-mer oligo was designed from the 3'-end of 26,090 annotated genes. Every 70-mer oligo is spotted once on each slide.
Organism:
Arabidopsis thaliana
1 Series
1 Sample
Download data
Platform
Accession:
GPL7632
ID:
100007632
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