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Items: 1 to 20 of 24

1.

RNA degradation analysis reveals ribosome dynamics in complex microbiome samples

(Submitter supplied) The microbiome has revealed itself as a key player in health and disease. To better understand its role, in addition to microbial diversity, it is important to understand species-specific activity and gene expression. While metatranscriptomics investigates mRNA abundance2, it does not inform about faster post-transcriptional regulation3. Although prokaryotic translation is a common target for antibiotics, a direct measurement of microbiome ribosome dynamics remains inaccessible. more...
Organism:
Enterococcus faecalis; Bacillus subtilis; Limosilactobacillus reuteri; Limosilactobacillus fermentum; human feces metagenome; Escherichia coli; Synechocystis sp. PCC 6803; Staphylococcus aureus; Bacillus amyloliquefaciens; Lactiplantibacillus plantarum; Cryptococcus neoformans; Caulobacter vibrioides; Segatella copri; Alistipes finegoldii; Hoylesella timonensis; compost metagenome; Listeria monocytogenes; Saccharomyces cerevisiae; Salmonella enterica; Parabacteroides merdae
Type:
Other
17 related Platforms
199 Samples
Download data: BEDGRAPH, TXT, XLSX
Series
Accession:
GSE153497
ID:
200153497

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Gene expression-based, through the hybridization of microbial DNA onto the designed probes on microarrys, i.e., GeoChip

(Submitter supplied) A total of 81515 genes belonging to 31 gene categories were detected in a total of 80 samples
Organism:
Bacteria; Eukaryota; soil metagenome; Archaea; compost metagenome; manure metagenome
Type:
Other
Platform:
GPL26791
79 Samples
Download data: TXT
Series
Accession:
GSE132839
ID:
200132839

Analyze with GEO2R

3.

Illumina NextSeq 500 (compost metagenome)

Organism:
compost metagenome
1 Series
2 Samples
Download data
Platform
Accession:
GPL28791
ID:
100028791

4.

comp_ctr_r1-2_c_o-r_v9

Organism:
compost metagenome
Source name:
Compost collected in Sundbyberg, Stockholm
Platform:
GPL28791
Series:
GSE153497
Download data: BEDGRAPH
Sample
Accession:
GSM4645359
ID:
304645359

SRA Run Selector

5.

comp_ctr_r1-1_c_o-r_v9

Organism:
compost metagenome
Source name:
Compost collected in Sundbyberg, Stockholm
Platform:
GPL28791
Series:
GSE153497
Download data: BEDGRAPH
Sample
Accession:
GSM4645358
ID:
304645358

SRA Run Selector

6.

Compost in livestock HZ replicate4

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893717
ID:
303893717

7.

Compost in livestock CP replicate1

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893714
ID:
303893714

8.

Compost in livestock ZZ replicate3

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893702
ID:
303893702

9.

Compost in livestock ZZ replicate1

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893690
ID:
303893690

10.

Compost in livestock JG replicate1

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893687
ID:
303893687

11.

Compost in livestock HZ replicate3

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893686
ID:
303893686

12.

Compost in livestock JG replicate2

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893684
ID:
303893684

13.

Compost in livestock CP replicate2

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893680
ID:
303893680

14.

Compost in livestock HZ replicate2

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893679
ID:
303893679

15.

Compost in livestock ZZ replicate2

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893676
ID:
303893676

16.

Compost in livestock JG replicate3

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893674
ID:
303893674

17.

Compost in livestock DX replicate1

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893672
ID:
303893672

18.

Compost in livestock ZZ replicate4

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893667
ID:
303893667

19.

Compost in livestock JG replicate4

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893665
ID:
303893665

20.

Compost in livestock HZ replicate1

Organism:
compost metagenome
Source name:
Microbes in Compost
Platform:
GPL26791
Series:
GSE132839
Download data
Sample
Accession:
GSM3893663
ID:
303893663

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