txid5570[Organism:noexp] - GEO DataSets

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Items: 10

Select item 2000839091.

Gene expression changes in Cenococcum geophilum-Pinus sylvestris ectomycorrhizal roots compared to Cenococcum geophilum free-living mycelium

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Cenococcum geophilum ectomycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 3 months, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Cenococcum geophilum (http://genome.jgi.doe.gov/Cenge3/Cenge3.home.html) reference transcripts using CLC Genomics Workbench 6.

Organism:: Cenococcum geophilum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22097
6 Samples

Download data: TXT

Series

Accession:: GSE83909

ID:: 200083909

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000805492.

Scots pine (Pinus sylvestris) differentially interacts with Cenococcum geophilum and other simultaneously inoculated mycorrhizal (ECM) fungi

(Submitter supplied) To identify specific gene networks induced in host roots by C. geophilum, we inoculated seedlings of Scots pine simultaneously with C. geophilum and either Suillus granulatus or Rhizopogon roseolus, two common ECM fungi associated to pines. We then measured the differential expression of Scots pine genes in the respective mycorrhizas using oligoarrays.

Organism:: Pinus sylvestris; Cenococcum geophilum

Type:: Expression profiling by array

Platform:: GPL21757
14 Samples

Download data: PAIR

Series

Accession:: GSE80549

ID:: 200080549

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000217573.

NimbleGen Cenococcum geophilum-Pinus sylvestris mixed 12-plex expression array [100616_CG-Pinus_EXP]

(Submitter supplied) This is a condensed platform of the full array which has probes designed from Cenococcum geophilum and Pinus sylvestris 454 sequences. Native array description file: 100616_CG-Pinus_EXP.ndf Design name: 100616_CG-Pinus_EXP Design ID: 532363 Protocol: Propriety in situ oligonucleotide synthesis.