txid37987[Organism:exp] - GEO DataSets

Select item 2002552751.

Regional Centromere Configuration in the Fungal Pathogens of Pneumocystis Genus

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Pneumocystis carinii; Pneumocystis murina

Type:: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

4 related Platforms
35 Samples

Download data: BED, BEDGRAPH, BROADPEAK, BW, NARROWPEAK

Series

Accession:: GSE255275

ID:: 200255275

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Select item 2002552352.

RNA-seq analysis of Pneumocystis murina in short term culture

(Submitter supplied) RNA-Seq analysis of Pneumocystis murina in culture at three time points post inoculation

Organism:: Pneumocystis murina

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34169
3 Samples

Download data: BW

Series

Accession:: GSE255235

ID:: 200255235

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Select item 2002551763.

DNA methylation analysis in Pneumocystis carinii using bisulfite sequencing

(Submitter supplied) Pneumocystis carinii bisulfite_seq

Organism:: Pneumocystis carinii

Type:: Methylation profiling by high throughput sequencing

Platform:: GPL34166
1 Sample

Download data: BEDGRAPH

Series

Accession:: GSE255176

ID:: 200255176

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Select item 2002324544.

Characterizing Pneumocystis murina centromeres with ChIP-seq (pm_191010)

(Submitter supplied) Pneumocystis is a relevant genetic system to study centromere formation in relation with host adaptation. How centromeres are formed and maintained in strongly host adapted fungal pathogens is poorly investigated. Centromeres are genomic regions that coordinate accurate chromosomal segregation during mitosis and meiosis. Yet, despite their essential function, centromeres evolve rapidly across eukaryotes. more...

Organism:: Pneumocystis murina

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL33410
3 Samples

Download data: BW, NARROWPEAK

Series

Accession:: GSE232454

ID:: 200232454

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Select item 2002324535.

Characterizing Pneumocystis carinii centromeres with ChIP-seq (pm_211220)

(Submitter supplied) Pneumocystis is a relevant genetic system to study centromere formation in relation with host adaptation. How centromeres are formed and maintained in strongly host adapted fungal pathogens is poorly investigated. Centromeres are genomic regions that coordinate accurate chromosomal segregation during mitosis and meiosis. Yet, despite their essential function, centromeres evolve rapidly across eukaryotes. more...

Organism:: Pneumocystis murina

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL33410
5 Samples

Download data: BROADPEAK, BW, NARROWPEAK

Series

Accession:: GSE232453

ID:: 200232453

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Select item 2002323576.

Characterizing Pneumocystis carinii centromeres with ChIP-seq (pc_210506)

(Submitter supplied) Pneumocystis is a relevant genetic system to study centromere formation in relation with host adaptation. How centromeres are formed and maintained in strongly host adapted fungal pathogens is poorly investigated. Centromeres are genomic regions that coordinate accurate chromosomal segregation during mitosis and meiosis. Yet, despite their essential function, centromeres evolve rapidly across eukaryotes. more...

Organism:: Pneumocystis carinii

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL33206
4 Samples

Download data: BW, NARROWPEAK

Series

Accession:: GSE232357

ID:: 200232357

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Select item 2002323557.

Characterizing Pneumocystis carinii centromeres with ChIP-seq (pc_210927)

(Submitter supplied) Pneumocystis is a relevant genetic system to study centromere formation in relation with host adaptation. How centromeres are formed and maintained in strongly host adapted fungal pathogens is poorly investigated. Centromeres are genomic regions that coordinate accurate chromosomal segregation during mitosis and meiosis. Yet, despite their essential function, centromeres evolve rapidly across eukaryotes. more...

Organism:: Pneumocystis carinii

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL33206
8 Samples

Download data: BW, NARROWPEAK

Series

Accession:: GSE232355

ID:: 200232355

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Select item 2002322258.

Characterizing Pneumocystis carinii centromeres with ChIP-seq III

(Submitter supplied) Pneumocystis is a relevant genetic system to study centromere formation in relation with host adaptation. How centromeres are formed and maintained in strongly host adapted fungal pathogens is poorly investigated. Centromeres are genomic regions that coordinate accurate chromosomal segregation during mitosis and meiosis. Yet, despite their essential function, centromeres evolve rapidly across eukaryotes. more...

Organism:: Pneumocystis carinii

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL33206
3 Samples

Download data: BW, NARROWPEAK

Series

Accession:: GSE232225

ID:: 200232225

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Select item 2002305989.

Characterizing Pneumocystis carinii centromeres with ChIP-seq II

(Submitter supplied) Pneumocystis is a relevant genetic system to study centromere formation in relation with host adaptation. How centromeres are formed and maintained in strongly host adapted fungal pathogens is poorly investigated. Centromeres are genomic regions that coordinate accurate chromosomal segregation during mitosis and meiosis. Yet, despite their essential function, centromeres evolve rapidly across eukaryotes. more...

Organism:: Pneumocystis carinii

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL33206
4 Samples

Download data: BW, NARROWPEAK

Series

Accession:: GSE230598

ID:: 200230598

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Select item 20022653610.

Characterizing Pneumocystis carinii centromeres with ChIP-seq

(Submitter supplied) Pneumocystis is a relevant genetic system to study centromere formation in relation with host adaptation. How centromeres are formed and maintained in strongly host adapted fungal pathogens is poorly investigated. Centromeres are genomic regions that coordinate accurate chromosomal segregation during mitosis and meiosis. Yet, despite their essential function, centromeres evolve rapidly across eukaryotes. more...

Organism:: Pneumocystis carinii

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL33206
4 Samples

Download data: BED, NARROWPEAK

Series

Accession:: GSE226536

ID:: 200226536

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Select item 20013610011.

Transcriptome of separated Pneumocystis life forms (asci and troph)

(Submitter supplied) Pneumocystis pneumonia is the most common serious opportunistic infection in patients with HIV/AIDS. Furthermore, Pneumocystis pneumonia is a feared complication of the immunosuppressive drug regimens used to treat autoimmunity, malignancy, and post-transplantation rejection. With an increasing at-risk population, there is a strong need for novel approaches to discover diagnostic and vaccine targets. more...