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| Status |
Public on Feb 08, 2024 |
| Title |
Regional Centromere Configuration in the Fungal Pathogens of Pneumocystis Genus |
| Organisms |
Pneumocystis carinii; Pneumocystis murina |
| Experiment type |
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://doi.org/10.1128/mbio.03185-23
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| Citation(s) |
38380929 |
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| Submission date |
Feb 07, 2024 |
| Last update date |
Feb 21, 2024 |
| Contact name |
Ousmane Hamadoun Cisse |
| E-mail(s) |
ousmane.cisse@nih.gov
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| Phone |
301-594-2123
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| Organization name |
National Institutes of Health
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| Street address |
10 Center Dr,
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| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Platforms (4)
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| GPL33206 |
HiSeq X Ten (Pneumocystis carinii) |
| GPL33410 |
HiSeq X Ten (Pneumocystis murina) |
| GPL34166 |
Illumina HiSeq 2500 (Pneumocystis carinii) |
| GPL34169 |
Illumina HiSeq 4000 (Pneumocystis murina) |
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| Samples (35)
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| GSM7078524 |
PC1, 201103, Pc_PC Input |
| GSM7229658 |
PCd0, 221005, Pc_A_d0 |
| GSM7229659 |
PCd0, 221005, Input |
| GSM7229660 |
PCd7, 221005, Pc_A_d7 |
| GSM7229661 |
PCd7, 221005, Input |
| GSM7323069 |
PC, 220606, Pc_A_d14 |
| GSM7323070 |
PC, 220606, Input |
| GSM7323071 |
PC, 220606, Pc_C_d14 |
| GSM7329356 |
PC2, 210927, Pc_A |
| GSM7329357 |
PC2, 210927, Pc_C |
| GSM7329359 |
PC2, 210927, Pc_H3 |
| GSM7329360 |
PC2, 210927, Pc_H4 |
| GSM7329361 |
PC2, 210927, Pc_Input |
| GSM7329362 |
PC2, 210927, Pc_H3K9me2 |
| GSM7329364 |
PC2, 210927, Pc_H3K9me3 |
| GSM7329365 |
PC2, 210927, Pc_H3K4me2 |
| GSM7329370 |
PC1, 210506, PcA |
| GSM7329371 |
PC1, 210506, PcH |
| GSM7329372 |
PC1, 210506, PcC |
| GSM7329373 |
PC1, 210506, PcN (Input) |
| GSM7336648 |
Pm, 211220, S19 |
| GSM7336649 |
Pm, 211220, S20 (input) |
| GSM7336650 |
Pm, 211220, S21 |
| GSM7336651 |
Pm, 211220, S22 |
| GSM7336652 |
Pm, 211220, S23 |
| GSM7336653 |
Pm1, 191010, CA |
| GSM7336654 |
Pm1, 191010, CC |
| GSM7336655 |
Pm1, 191010, CP |
| GSM8065411 |
B5M |
| GSM8067114 |
Pneumocystis murina, coculture A549/LET1, day 0 |
| GSM8067115 |
Pneumocystis murina, coculture A549/LET1, day 7 |
| GSM8067116 |
Pneumocystis murina, coculture A549/LET1, day 14 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE226536 |
Characterizing Pneumocystis carinii centromeres with ChIP-seq |
| GSE230598 |
Characterizing Pneumocystis carinii centromeres with ChIP-seq II |
| GSE232225 |
Characterizing Pneumocystis carinii centromeres with ChIP-seq III |
| GSE232355 |
Characterizing Pneumocystis carinii centromeres with ChIP-seq (pc_210927) |
| GSE232357 |
Characterizing Pneumocystis carinii centromeres with ChIP-seq (pc_210506) |
| GSE232453 |
Characterizing Pneumocystis carinii centromeres with ChIP-seq (pm_211220) |
| GSE232454 |
Characterizing Pneumocystis murina centromeres with ChIP-seq (pm_191010) |
| GSE255176 |
DNA methylation analysis in Pneumocystis carinii using bisulfite sequencing |
| GSE255235 |
RNA-seq analysis of Pneumocystis murina in short term culture |
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| Relations |
| BioProject |
PRJNA1074325 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE255275_RAW.tar |
78.1 Mb |
(http)(custom) |
TAR (of BED, BEDGRAPH, BROADPEAK, BW, NARROWPEAK) |
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