txid115934[Organism:noexp] - GEO DataSets - NCBI

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Select item 2000515961.

CNV in sexual and apomictic Boechera

(Submitter supplied) The absence of meiosis and sex are expected to lead to mutation accumulation in asexual (apomictic) plants. We have performed a double-validated analysis of copy number variation (CNV) on 10 biological replicates each of diploid sexual and diploid apomictic Boechera using a high-density (>700K) custom microarray, in order to compare mutation accumulation in the form of CNV between the transcribing regions of their genomes. more...

Organism:: Boechera crandallii; Boechera polyantha; Boechera lignifera; Boechera divaricarpa; Boechera retrofracta; Boechera stricta; Boechera holboellii; Boechera schistacea; Boechera retrofracta x Boechera stricta; Boechera duchesnensis

Type:: Genome variation profiling by genome tiling array

Platform:: GPL17827
40 Samples

Download data: GFF

Series

Accession:: GSE51596

ID:: 200051596

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 3013632082.

Sexual_Plant10-Cy5

Organism:: Boechera divaricarpa; Boechera polyantha; Boechera stricta; Boechera lignifera; Boechera schistacea; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera crandallii; Boechera retrofracta

Source name:: Sexual_Plant10_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363208

ID:: 301363208

Select item 3013632073.

Sexual_Plant10-Cy3

Organism:: Boechera lignifera; Boechera divaricarpa; Boechera retrofracta; Boechera stricta; Boechera schistacea; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera crandallii; Boechera polyantha

Source name:: Sexual_Plant10_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363207

ID:: 301363207

Select item 3013632064.

Sexual_Plant9-Cy5

Organism:: Boechera retrofracta; Boechera schistacea; Boechera lignifera; Boechera divaricarpa; Boechera stricta; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera crandallii; Boechera polyantha

Source name:: Sexual_Plant9_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363206

ID:: 301363206

Select item 3013632055.

Sexual_Plant9-Cy3

Organism:: Boechera lignifera; Boechera divaricarpa; Boechera duchesnensis; Boechera retrofracta; Boechera schistacea; Boechera stricta; Boechera retrofracta x Boechera stricta; Boechera crandallii; Boechera polyantha

Source name:: Sexual_Plant9_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363205

ID:: 301363205

Select item 3013632046.

Sexual_Plant8-Cy5

Organism:: Boechera retrofracta; Boechera schistacea; Boechera stricta; Boechera lignifera; Boechera divaricarpa; Boechera crandallii; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera polyantha

Source name:: Sexual_Plant8_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363204

ID:: 301363204

Select item 3013632037.

Sexual_Plant8-Cy3

Organism:: Boechera stricta; Boechera crandallii; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera retrofracta; Boechera schistacea; Boechera polyantha; Boechera lignifera; Boechera divaricarpa

Source name:: Sexual_Plant8_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363203

ID:: 301363203

Select item 3013632028.

Sexual_Plant7-Cy5

Organism:: Boechera polyantha; Boechera stricta; Boechera crandallii; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera retrofracta; Boechera lignifera; Boechera divaricarpa; Boechera schistacea

Source name:: Sexual_Plant7_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363202

ID:: 301363202

Select item 3013632019.

Sexual_Plant7-Cy3

Organism:: Boechera stricta; Boechera crandallii; Boechera retrofracta x Boechera stricta; Boechera polyantha; Boechera retrofracta; Boechera lignifera; Boechera divaricarpa; Boechera schistacea; Boechera duchesnensis

Source name:: Sexual_Plant7_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363201

ID:: 301363201

Select item 30136320010.

Sexual_Plant6-Cy5

Organism:: Boechera polyantha; Boechera crandallii; Boechera retrofracta; Boechera stricta; Boechera lignifera; Boechera divaricarpa; Boechera schistacea; Boechera retrofracta x Boechera stricta; Boechera duchesnensis

Source name:: Sexual_Plant6_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363200

ID:: 301363200

Select item 30136319911.

Sexual_Plant6-Cy3

Organism:: Boechera lignifera; Boechera divaricarpa; Boechera crandallii; Boechera retrofracta; Boechera polyantha; Boechera stricta; Boechera schistacea; Boechera retrofracta x Boechera stricta; Boechera duchesnensis

Source name:: Sexual_Plant6_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363199

ID:: 301363199

Select item 30136319812.

Sexual_Plant5-Cy5

Organism:: Boechera lignifera; Boechera divaricarpa; Boechera retrofracta; Boechera schistacea; Boechera crandallii; Boechera polyantha; Boechera stricta; Boechera retrofracta x Boechera stricta; Boechera duchesnensis

Source name:: Sexual_Plant5_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363198

ID:: 301363198

Select item 30136319713.

Sexual_Plant5-Cy3

Organism:: Boechera retrofracta; Boechera schistacea; Boechera lignifera; Boechera divaricarpa; Boechera duchesnensis; Boechera crandallii; Boechera polyantha; Boechera stricta; Boechera retrofracta x Boechera stricta

Source name:: Sexual_Plant5_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363197

ID:: 301363197

Select item 30136319614.

Sexual_Plant4-Cy5

Organism:: Boechera stricta; Boechera lignifera; Boechera divaricarpa; Boechera crandallii; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera retrofracta; Boechera schistacea; Boechera polyantha

Source name:: Sexual_Plant4_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363196

ID:: 301363196

Select item 30136319515.

Sexual_Plant4-Cy3

Organism:: Boechera retrofracta; Boechera schistacea; Boechera polyantha; Boechera stricta; Boechera crandallii; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera lignifera; Boechera divaricarpa

Source name:: Sexual_Plant4_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363195

ID:: 301363195

Select item 30136319416.

Sexual_Plant3-Cy5

Organism:: Boechera stricta; Boechera crandallii; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera polyantha; Boechera lignifera; Boechera divaricarpa; Boechera schistacea; Boechera retrofracta

Source name:: Sexual_Plant3_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363194

ID:: 301363194

Select item 30136319317.

Sexual_Plant3-Cy3

Organism:: Boechera polyantha; Boechera stricta; Boechera crandallii; Boechera retrofracta x Boechera stricta; Boechera lignifera; Boechera divaricarpa; Boechera schistacea; Boechera duchesnensis; Boechera retrofracta

Source name:: Sexual_Plant3_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363193

ID:: 301363193

Select item 30136319218.

Sexual_Plant2-Cy5

Organism:: Boechera polyantha; Boechera stricta; Boechera lignifera; Boechera divaricarpa; Boechera schistacea; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera crandallii; Boechera retrofracta

Source name:: Sexual_Plant2_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363192

ID:: 301363192

Select item 30136319119.

Sexual_Plant2-Cy3

Organism:: Boechera lignifera; Boechera divaricarpa; Boechera stricta; Boechera schistacea; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera crandallii; Boechera retrofracta; Boechera polyantha

Source name:: Sexual_Plant2_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363191

ID:: 301363191

Select item 30136319020.

Sexual_Plant1-Cy5

Organism:: Boechera retrofracta; Boechera lignifera; Boechera divaricarpa; Boechera stricta; Boechera schistacea; Boechera retrofracta x Boechera stricta; Boechera duchesnensis; Boechera crandallii; Boechera polyantha

Source name:: Sexual_Plant1_CGH (channel 1) pooled reference sample (mixture of different genotypes) (channel 2)

Platform:: GPL17827
Series:: GSE51596

Download data: GFF

Sample

Accession:: GSM1363190

ID:: 301363190

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