GEO DataSets

(Submitter supplied) The oomycete Pythium oligandrum is a potential biocontrol agent to control a wide range of fungal and oomycetes-caused diseases such as Pythium myriotylum-caused rhizome rot in ginger leading to reduced yields and compromised quality. Previously, P. oligandrum has been studied for its plant growth-promoting potential by auxin production and induction of disease resistance by elicitors such as oligandrin. more...

Organism:

Zingiber officinale

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33502

6 Samples

Download data: TXT

(Submitter supplied) Comparative analysis of micro-RNA (miRNA) in ginger-derived nanoparticles and ginger donor tissue using next-generation sequencing (NGS). The ginger-derived nanoparticles were prepared by differential ultracentrifuges. We mapped about 30 to 50 million sequence reads to the plant miRNA database and identified total of 2228 miRNAs including 532 miRNAs higher in nanoparticles and 1,280 miRNAs higner in tissue.

Organism:

Zingiber officinale

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL25221

3 Samples

Download data: XLSX

(Submitter supplied) In this study, we found that the highly expressed miRNAs appear in EPDELNs (Edible plant-derived exosome-like nanoparticles) have the potential to regulate human mRNA in a cross-kingdom manner. Target prediction and functional analysis revealed that highly expressed miRNAs were closely associated with inflammatory responses and cancer-related pathways. Therefore, we hypothesized that miRNAs in EPDELNs may be a crucial factor behind the regulatory function of EPDELNs.

Organism:

Actinidia chinensis; Cucumis melo; Pisum sativum; Vaccinium; Cocos nucifera; Citrus x paradisi; Pyrus; Citrus reticulata; Glycine max; Zingiber officinale; Solanum lycopersicum

Type:

Non-coding RNA profiling by high throughput sequencing

11 related Platforms

11 Samples

Download data: TXT, XLSX

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Zingiber officinale; Curcuma longa

Type:

Expression profiling by array

Platform:

GPL8746

48 Samples

Download data: TXT

(Submitter supplied) Rhizome, root and leaf of Yellow ginger were compared in this study. Rhizomes from 2, 3, 4, 6, and 7 month old plants (after planting) were compared to each other and to root from 2 and 7 month plants and leaves from 2 and 7 month old plants. Plants were grown under controlled conditions in the greenhouse.

Organism:

Zingiber officinale; Curcuma longa

Type:

Expression profiling by array

Platform:

GPL8746

24 Samples

Download data: TXT

(Submitter supplied) Two varieties of turmeric, FMO (Fat Mild Orange) and TYA (Thin Yellow Aromatic) were compared. Rhizomes were harvested 3, 5, and 7 months after planting, roots were harvested at 7 months, and leaves were harvested at 7 months. Plants were grown under controlled conditions in the greenhouse.

Organism:

Zingiber officinale; Curcuma longa

Type:

Expression profiling by array

Platform:

GPL8746

24 Samples

Download data: TXT

(Submitter supplied) Design Format: 8 X 15K (each slide has 8 blocks of 15K array) Number of sequences on each array: 1 (no duplicated spots in each array) Control Grid: IS-15744-8-V1_8x15K_Gx_EQC_V20060608 Protocol: Application: Expression AMADID: 020086 Format: IS-15744-8-V1 Creation Date: 04/23/2008 Species: Z.Officinale/C.Longa Probe#: 15208

Organism:

Zingiber officinale; Curcuma longa

3 Series

48 Samples

Download data: TXT