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Items: 3

1.

Next generation sequencing analysis of control and KSR1 knockdown CRC cell line translatomes.

(Submitter supplied) KSR1 signaling alters the translational landscape of human CRC cells to support their survival. To determine the effect of KSR1 on translatomes in colon cancer cells, we performed genome-wide polysome profiling. We stably expressed short hairpin RNA (shRNA) constructs targeting KSR1 or a non-targeting control in two K-Ras mutant CRC cell lines, HCT116 and HCT15. We isolated and quantified both total mRNA and efficiently translated mRNAs (associated with ≥ 3 ribosomes) using RNA sequencing. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21697
24 Samples
Download data: TXT
Series
Accession:
GSE164492
ID:
200164492

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

NextSeq 550 (Homo sapiens)

Organism:
Homo sapiens
1488 Series
44381 Samples
Download data
Platform
Accession:
GPL21697
ID:
100021697

3.

HCT116 Con Poly Rep3

Organism:
Homo sapiens
Source name:
Colorectal Cancer Cell line
Platform:
GPL21697
Series:
GSE164492
Download data
Sample
Accession:
GSM5012145
ID:
305012145

SRA Run Selector

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db=gds|term=GSM5012145[Accession]|query=6|qty=2|blobid=MCID_673576fe909f1e7b131246c7|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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