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Items: 4

1.

CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other
Platforms:
GPL21273 GPL24247 GPL17021
187 Samples
Download data: BED, BW, HIC
Series
Accession:
GSE123670
ID:
200123670

PubMed Similar studies

2.

CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [BL-Hi-C]

(Submitter supplied) CCCTC binding factor (CTCF) has been implicated in mediating chromatin insulation and long-distance interactions between enhancer and promoter. In this study, to study the roles of CTCF in somatic cell reprogramming, we performed RNA-seq, Hi-C, ChIP-seq and ATAC-seq at the specific stage of reprogramming. Through bioinformatics analysis, our data indicated that CTCF promotes enhancer-promoter interactions and chromatin accessibility to regulate the expression of key pluripotency genes; meanwhile, it serves as an insulator to suppress the expression of key somatic genes. more...
Organism:
Mus musculus
Type:
Other
Platforms:
GPL24247 GPL21273
40 Samples
Download data: HIC
Series
Accession:
GSE123653
ID:
200123653

PubMed Similar studies SRA Run Selector

3.

HiSeq X Ten (Mus musculus)

Organism:
Mus musculus
1808 Series
40033 Samples
Download data
Platform
Accession:
GPL21273
ID:
100021273

4.

oecontrol_D10_rep1 [BL-Hi-C]

Organism:
Mus musculus
Source name:
Reprogramming cells, OSKM overexpress control
Platform:
GPL21273
Series:
GSE123653 GSE123670
Download data: HIC
Sample
Accession:
GSM3508809
ID:
303508809

SRA Run Selector

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db=gds|term=GSM3508809[Accession]|query=7|qty=2|blobid=MCID_67278c2a9f58a261470e7730|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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