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GEO accession:
Series GSE123670
Query DataSets for GSE123670
Status
Public on Apr 05, 2022
Title
CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35385732
Submission date
Dec 11, 2018
Last update date
Apr 11, 2022
Contact name
ya wei song
E-mail(s)
song_yawei@gibh.ac.cn
Phone
13288824450
Organization name
Guangzhou Institute of Biomedicine and Health,Chinese Academy of Sciences
Department
South China Institute for Stem Cell Biology and Regenerative Medicine
Street address
190 Kai Yuan Avenue, Science Park
City
Guangzhou
State/province
Guangdong
ZIP/Postal code
510530
Country
China
Platforms (3)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL21273
HiSeq X Ten (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (187)
Less...
More...
GSM3508537
D10_oecontrol_rep1 [RNA-seq]
GSM3508538
D10_oecontrol_rep2 [RNA-seq]
GSM3508539
D10_oeCTCF_rep1 [RNA-seq]
GSM3508540
D10_oeCTCF_rep2 [RNA-seq]
GSM3508541
D10_oeCTCF&shSmarca5_rep1 [RNA-seq]
GSM3508542
D10_oeCTCF&shSmarca5_rep2 [RNA-seq]
GSM3508543
D10_shcontrol_rep1 [RNA-seq]
GSM3508544
D10_shcontrol_rep2 [RNA-seq]
GSM3508545
D10_shCTCF_rep1 [RNA-seq]
GSM3508546
D10_shCTCF_rep2 [RNA-seq]
GSM3508547
MEFs [RNA-seq]
GSM3508548
iPSCs [RNA-seq]
GSM3508689
D10_control_CTCF [ChIP-seq]
GSM3508690
D10_oeCTCF_CTCF [ChIP-seq]
GSM3508691
D10_oeCTCF_shSmarca5_CTCF [ChIP-seq]
GSM3508692
D10_control_input [ChIP-seq]
GSM3508693
D10_oeCTCF_input [ChIP-seq]
GSM3508694
D10_oeCTCF_shSmarca5_input [ChIP-seq]
GSM3508695
E14_WT_CTCF [ChIP-seq]
GSM3508696
E14_Smarca5-KO_CTCF [ChIP-seq]
GSM3508697
E14_WT_input [ChIP-seq]
GSM3508698
E14_Smarca5-KO_input [ChIP-seq]
GSM3508805
OG2MEF_rep1 [BL-Hi-C]
GSM3508806
OG2MEF_rep2 [BL-Hi-C]
GSM3508807
OSKM_D10_rep1 [BL-Hi-C]
GSM3508808
OSKM_D10_rep2 [BL-Hi-C]
GSM3508809
oecontrol_D10_rep1 [BL-Hi-C]
GSM3508810
oecontrol_D10_rep2 [BL-Hi-C]
GSM3508811
oeCTCF_D10_rep1 [BL-Hi-C]
GSM3508812
oeCTCF_D10_rep2 [BL-Hi-C]
GSM3508813
oeCTCF_shSmarca5_D10_rep1 [BL-Hi-C]
GSM3508814
oeCTCF_shSmarca5_D10_rep2 [BL-Hi-C]
GSM3508815
shcontrol_D10_rep1 [BL-Hi-C]
GSM3508816
shcontrol_D10_rep2 [BL-Hi-C]
GSM3508817
shCTCF_D10_rep1 [BL-Hi-C]
GSM3508818
shCTCF_D10_rep2 [BL-Hi-C]
GSM4976366
D0_shLuci_rep1 [RNA-seq]
GSM4976367
D0_shLuci_rep2 [RNA-seq]
GSM4976368
D0_shCTCF_rep1 [RNA-seq]
GSM4976369
D0_shCTCF_rep2 [RNA-seq]
GSM4976370
D3_shLuci_Thy1+_rep1 [RNA-seq]
GSM4976371
D3_shLuci_Thy1+_rep2 [RNA-seq]
GSM4976372
D3_shCTCF_Thy1+_rep1 [RNA-seq]
GSM4976373
D3_shCTCF_Thy1+_rep2 [RNA-seq]
GSM4976374
D3_shLuci_SSEA1+_rep1 [RNA-seq]
GSM4976375
D3_shLuci_SSEA1+_rep2 [RNA-seq]
GSM4976376
D3_shCTCF_SSEA1+_rep1 [RNA-seq]
GSM4976377
D3_shCTCF_SSEA1+_rep2 [RNA-seq]
GSM4976378
D3_shLuci_SSEA1-Thy1-_rep1 [RNA-seq]
GSM4976379
D3_shLuci_SSEA1-Thy1-_rep2 [RNA-seq]
GSM4976380
D3_shCTCF_SSEA1-Thy1-_rep1 [RNA-seq]
GSM4976381
D3_shCTCF_SSEA1-Thy1-_rep2 [RNA-seq]
GSM4976382
D6_shLuci_Thy1+_rep1 [RNA-seq]
GSM4976383
D6_shLuci_Thy1+_rep2 [RNA-seq]
GSM4976384
D6_shCTCF_Thy1+_rep1 [RNA-seq]
GSM4976385
D6_shCTCF_Thy1+_rep2 [RNA-seq]
GSM4976386
D6_shLuci_SSEA1+_rep1 [RNA-seq]
GSM4976387
D6_shLuci_SSEA1+_rep2 [RNA-seq]
GSM4976388
D6_shCTCF_SSEA1+_rep1 [RNA-seq]
GSM4976389
D6_shCTCF_SSEA1+_rep2 [RNA-seq]
GSM4976390
D6_shLuci_SSEA1-Thy1-_rep1 [RNA-seq]
GSM4976391
D6_shLuci_SSEA1-Thy1-_rep2 [RNA-seq]
GSM4976392
D6_shCTCF_SSEA1-Thy1-_rep1 [RNA-seq]
GSM4976393
D6_shCTCF_SSEA1-Thy1-_rep2 [RNA-seq]
GSM4976394
D9_shLuci_Thy1+_rep1 [RNA-seq]
GSM4976395
D9_shLuci_Thy1+_rep2 [RNA-seq]
GSM4976396
D9_shCTCF_Thy1+_rep1 [RNA-seq]
GSM4976397
D9_shCTCF_Thy1+_rep2 [RNA-seq]
GSM4976398
D9_shLuci_SSEA1+_rep1 [RNA-seq]
GSM4976399
D9_shLuci_SSEA1+_rep2 [RNA-seq]
GSM4976400
D9_shCTCF_SSEA1+_rep1 [RNA-seq]
GSM4976401
D9_shCTCF_SSEA1+_rep2 [RNA-seq]
GSM4976402
D9_shLuci_SSEA1-Thy1-_rep1 [RNA-seq]
GSM4976403
D9_shLuci_SSEA1-Thy1-_rep2 [RNA-seq]
GSM4976404
D9_shCTCF_SSEA1-Thy1-_rep1 [RNA-seq]
GSM4976405
D9_shCTCF_SSEA1-Thy1-_rep2 [RNA-seq]
GSM4976406
D12_shLuci_GFP+_rep1 [RNA-seq]
GSM4976407
D12_shLuci_GFP+_rep2 [RNA-seq]
GSM4976408
D12_shCTCF_GFP+_rep1 [RNA-seq]
GSM4976409
D12_shCTCF_GFP+_rep2 [RNA-seq]
GSM4978038
E14_oeSmarca5_SMARCA5_rep1 [ChIP-seq]
GSM4978039
E14_oeSmarca5_SMARCA5_rep2 [ChIP-seq]
GSM4978040
E14_oeSmarca5_input [ChIP-seq]
GSM4978041
CTCF-ChIP_D12_shLuci_Oct4+_rep1 [ChIP-seq]
GSM4978042
CTCF-ChIP_D12_shLuci_Oct4+_rep2 [ChIP-seq]
GSM4978043
CTCF-ChIP_D12_shLuci_Oct4+_rep3 [ChIP-seq]
GSM4978044
CTCF-ChIP_D12_shCTCF_Oct4+_rep1 [ChIP-seq]
GSM4978045
CTCF-ChIP_D12_shCTCF_Oct4+_rep2 [ChIP-seq]
GSM4978046
CTCF-ChIP_D12_shCTCF_Oct4+_rep3 [ChIP-seq]
GSM4978047
CTCF-ChIP-D0-shLuci_rep1 [ChIP-seq]
GSM4978048
CTCF-ChIP-D0-shLuci_rep2 [ChIP-seq]
GSM4978049
CTCF-ChIP-D0-shCTCF_rep1 [ChIP-seq]
GSM4978050
CTCF-ChIP-D0-shCTCF_rep2 [ChIP-seq]
GSM4978051
CTCF-ChIP-D3-shLuci-Thy1+ [ChIP-seq]
GSM4978052
CTCF-ChIP-D3-shCTCF-Thy1+ [ChIP-seq]
GSM4978053
CTCF-ChIP-D6-shLuci_SSEA1-Thy1- [ChIP-seq]
GSM4978054
CTCF-ChIP-D6-shCTCF_SSEA1-Thy1- [ChIP-seq]
GSM4978055
CTCF-ChIP-D6-shLuci_SSEA1+ [ChIP-seq]
GSM4978056
CTCF-ChIP-D6-shCTCF_SSEA1+ [ChIP-seq]
GSM4978057
CTCF-ChIP-D9-shLuci_SSEA1-Thy1- [ChIP-seq]
GSM4978058
CTCF-ChIP-D9-shCTCF_SSEA1-Thy1- [ChIP-seq]
GSM4978059
CTCF-ChIP-D9-shLuci_SSEA1+ [ChIP-seq]
GSM4978060
CTCF-ChIP-D9-shCTCF_SSEA1+ [ChIP-seq]
GSM4978061
CTCF-ChIP-D9-shLuci_Thy1+ [ChIP-seq]
GSM4978062
CTCF-ChIP-D9-shCTCF_Thy1+ [ChIP-seq]
GSM4978063
Input_D12_shLuci_Oct4+_rep1 [ChIP-seq]
GSM4978064
Input_D12_shLuci_Oct4+_rep2 [ChIP-seq]
GSM4978065
Input_D12_shLuci_Oct4+_rep3 [ChIP-seq]
GSM4978066
Input_D12_shCTCF_Oct4+_rep1 [ChIP-seq]
GSM4978067
Input_D12_shCTCF_Oct4+_rep2 [ChIP-seq]
GSM4978068
Input_D12_shCTCF_Oct4+_rep3 [ChIP-seq]
GSM4978069
Input-D0-shLuci_rep1 [ChIP-seq]
GSM4978070
Input-D0-shLuci_rep2 [ChIP-seq]
GSM4978071
Input-D0-shCTCF_rep1 [ChIP-seq]
GSM4978072
Input-D0-shCTCF_rep2 [ChIP-seq]
GSM4978073
Input-D3-shLuci-Thy1+ [ChIP-seq]
GSM4978074
Input-D3-shCTCF-Thy1+ [ChIP-seq]
GSM4978075
Input-D6-shLuci_SSEA1-Thy1- [ChIP-seq]
GSM4978076
Input-D6-shCTCF_SSEA1-Thy1- [ChIP-seq]
GSM4978077
Input-D6-shLuci_SSEA1+ [ChIP-seq]
GSM4978078
Input-D6-shCTCF_SSEA1+ [ChIP-seq]
GSM4978079
Input-D9-shLuci_SSEA1-Thy1- [ChIP-seq]
GSM4978080
Input-D9-shCTCF_SSEA1-Thy1- [ChIP-seq]
GSM4978081
Input-D9-shLuci_SSEA1+ [ChIP-seq]
GSM4978082
Input-D9-shCTCF_SSEA1+ [ChIP-seq]
GSM4978083
Input-D9-shLuci_Thy1+ [ChIP-seq]
GSM4978084
Input-D9-shCTCF_Thy1+ [ChIP-seq]
GSM4978085
D10_control_CTCF_rep2 [ChIP-seq]
GSM4978086
D10_oeCTCF_CTCF_rep2 [ChIP-seq]
GSM4978087
D0_shLuci_rep1 [BL-Hi-C]
GSM4978088
D0_shLuci_rep2 [BL-Hi-C]
GSM4978089
D0_shCTCF_rep1 [BL-Hi-C]
GSM4978090
D0_shCTCF_rep2 [BL-Hi-C]
GSM4978093
D6_shLuci_SSEA1+ [BL-Hi-C]
GSM4978094
D6_shCTCF_SSEA1+ [BL-Hi-C]
GSM4978099
D9_shLuci_SSEA1+ [BL-Hi-C]
GSM4978100
D9_shCTCF_SSEA1+ [BL-Hi-C]
GSM4978101
D9_shLuci_Thy1+ [BL-Hi-C]
GSM4978102
D9_shCTCF_Thy1+ [BL-Hi-C]
GSM4978224
D10_oeCTCF_rep1 [ATAC-seq]
GSM4978225
D10_oeCTCF_rep2 [ATAC-seq]
GSM4978226
D10_oeCTCF_shsmarca5_rep1 [ATAC-seq]
GSM4978227
D10_oeCTCF_shsmarca5_rep2 [ATAC-seq]
GSM4978228
D10_oeControl_rep1 [ATAC-seq]
GSM4978229
D10_oeControl_rep2 [ATAC-seq]
GSM4978230
shLuci_D12_ATAC-rep1 [ATAC-seq]
GSM4978231
shLuci_D12_ATAC-rep2 [ATAC-seq]
GSM4978232
shSmarca5_D12_ATAC-rep1 [ATAC-seq]
GSM4978233
shSmarca5_D12_ATAC-rep2 [ATAC-seq]
GSM4978234
D0_shLuci_rep1 [ATAC-seq]
GSM4978235
D0_shLuci_rep2 [ATAC-seq]
GSM4978236
D0_shCTCF_rep1 [ATAC-seq]
GSM4978237
D0_shCTCF_rep2 [ATAC-seq]
GSM4978238
D12_shLuci_GFP+_rep1 [ATAC-seq]
GSM4978239
D12_shLuci_GFP+_rep2 [ATAC-seq]
GSM4978240
D12_shCTCF_GFP+_rep1 [ATAC-seq]
GSM4978241
D12_shCTCF_GFP+_rep2 [ATAC-seq]
GSM4978242
D3_shLuci_Thy1+ [ATAC-seq]
GSM4978243
D3_shCTCF_Thy1+ [ATAC-seq]
GSM4978244
D6_shLuci_SSEA1+ [ATAC-seq]
GSM4978245
D6_shCTCF_SSEA1+ [ATAC-seq]
GSM4978246
D6_shLuci_Thy1+ [ATAC-seq]
GSM4978247
D6_shCTCF_Thy1+ [ATAC-seq]
GSM4978248
D6_shLuci_SSEA1-Thy1- [ATAC-seq]
GSM4978249
D6_shCTCF_SSEA1-Thy1- [ATAC-seq]
GSM4978250
D9_shLuci_SSEA1+ [ATAC-seq]
GSM4978251
D9_shCTCF_SSEA1+ [ATAC-seq]
GSM4978252
D9_shLuci_Thy1+ [ATAC-seq]
GSM4978253
D9_shCTCF_Thy1+ [ATAC-seq]
GSM4978254
D9_shLuci_SSEA1-Thy1- [ATAC-seq]
GSM4978255
D9_shCTCF_SSEA1-Thy1- [ATAC-seq]
GSM5702457
D3_shLuci_Thy1+_rep1 [BL-Hi-C]
GSM5702458
D3_shCTCF_Thy1+_rep1 [BL-Hi-C]
GSM5702459
D6_shLuci_Thy1+_rep1 [BL-Hi-C]
GSM5702460
D6_shCTCF_Thy1+_rep1 [BL-Hi-C]
GSM5702461
D6_shLuci_Thy1-SSEA1-_rep1 [BL-Hi-C]
GSM5702462
D6_shCTCF_Thy1-SSEA1-_rep1 [BL-Hi-C]
GSM5702463
D9_shLuci_Thy1-SSEA1-_rep1 [BL-Hi-C]
GSM5702464
D9_shCTCF_Thy1-SSEA1-_rep1 [BL-Hi-C]
GSM5702465
D3_shLuci_Thy1+_rep2 [BL-Hi-C]
GSM5702466
D3_shCTCF_Thy1+_rep2 [BL-Hi-C]
GSM5702467
D6_shLuci_Thy1+_rep2 [BL-Hi-C]
GSM5702468
D6_shCTCF_Thy1+_rep2 [BL-Hi-C]
GSM5702469
D6_shLuci_Thy1-SSEA1-_rep2 [BL-Hi-C]
GSM5702470
D6_shCTCF_Thy1-SSEA1-_rep2 [BL-Hi-C]
GSM5702471
D9_shLuci_Thy1-SSEA1-_rep2 [BL-Hi-C]
GSM5702472
D9_shCTCF_Thy1-SSEA1-_rep2 [BL-Hi-C]
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE123641
CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [RNA-seq]
GSE123651
CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [ChIP-seq]
GSE123653
CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [BL-Hi-C]
GSE123667
CTCF Functions as an Insulator for Somatic Genes and a Structural Regulator for Pluripotent Genes during Reprogramming [ATAC-seq]
Relations
BioProject
PRJNA509473
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE123670_RAW.tar
73.5 Gb
(http)
(custom)
TAR (of BED, BW, HIC)
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