GSM1116349[Accession] - GEO DataSets

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Items: 4

Select item 2000469541.

Default DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by genome tiling array; Methylation profiling by genome tiling array; Expression profiling by high throughput sequencing

Platforms:: GPL16978 GPL13112
63 Samples

Download data: BEDGRAPH, GFF, PAIR, TXT

Series

Accession:: GSE46954

ID:: 200046954

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000458362.

Default DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation (ChIP-chip and MIRA-chip)

(Submitter supplied) To understand what dictates the emerging patterns of de novo DNA methylation, we mapped DNA methylation, chromatin, and transcription changes in purified fetal mouse germ cells using MIRA-chip, ChIP-chip, and strand-specific RNA-seq, respectively. De novo methylation occurred without any apparent trigger from preexisting repressing chromatin marks but was preceded by broad, low-level transcription along the entire genome in prospermatogonia. more...

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by genome tiling array; Methylation profiling by genome tiling array

Platform:: GPL16978
59 Samples

Download data: GFF, PAIR

Series

Accession:: GSE45836

ID:: 200045836

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000169783.

NimbleGen custom mouse imprinted array [110228_MM9_PS_ChIP]

(Submitter supplied) Design name: 110228_MM9_PS_ChIP Design ID: 549521 Native array description file: 110228_MM9_PS_ChIP.ndf Native array description file: 110228_MM9_PS_ChIP.pos Annotation in this Platform is based on NCBI mouse build 37 (mm9). Genomic regions along imprinted domains, IAPs and control regions, isothermal tiling oligos at 100bp. Protocol: See manufacturer's web site (www.nimblegen.com).