NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE46954 Query DataSets for GSE46954
Status Public on Jul 31, 2013
Title Default DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by genome tiling array
Methylation profiling by genome tiling array
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 23810559
Submission date May 15, 2013
Last update date May 15, 2019
Contact name Xiwei Wu
E-mail(s) xwu@coh.org
Organization name City of Hope National Medical Center
Department Computational and Quantitative Medicine
Street address 1500 E. Duarte Rd.
City Duarte
State/province CA
ZIP/Postal code 91010
Country USA
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL16978 NimbleGen custom mouse imprinted array [110228_MM9_PS_ChIP]
Samples (63)
GSM1116315 H3K27me3 in the female germ cells at 15.5 dpc
GSM1116316 H3K27me3 in the male germ cells at 15.5 dpc
GSM1116317 H3K36me3 in the female germ cells at 15.5 dpc
This SuperSeries is composed of the following SubSeries:
GSE45836 Default DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation (ChIP-chip and MIRA-chip)
GSE46953 Default DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation (RNA-Seq)
Relations
BioProject PRJNA203147

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46954_RAW.tar 2.0 Gb (http)(custom) TAR (of BEDGRAPH, GFF, PAIR, TXT)
SRA Run SelectorHelp

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap