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Items: 14

1.

Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by genome tiling array
Platforms:
GPL13112 GPL14183 GPL17021
10 Samples
Download data: BAR, BEDGRAPH, BW, CEL
Series
Accession:
GSE62269
ID:
200062269
2.

Illumina HiSeq 2500 (Mus musculus)

Platform
Accession:
GPL17021
ID:
100017021
3.

Mus musculus HoxD cluster tiling PRNFGMm2b520462F

(Submitter supplied) Oligonucleotide tiling arrays manufactured using photolithography contain probes mapping to a 2 Mb region around the HoxD cluster. Probes corresponding to repetitive or low complexity sequences located within the region were excluded from the array. The arrays are based on NCBI build 36 of the mouse genome (mm8) and contained a total of 75,097 25-mer oligonucleotides (PM and MM) positioned every 15 bp mapping to the reverse strand of chr2: 73,709,305-75,470,233 and 6,323 probes (PM and MM) mapping to the forward strand of chr2: 74,453,853-74, 565,969.
Organism:
Mus musculus
13 Series
91 Samples
Download data: BPMAP, TXT
Platform
Accession:
GPL14183
ID:
100014183
4.

Illumina HiSeq 2000 (Mus musculus)

Platform
Accession:
GPL13112
ID:
100013112
5.

E15.5 Genital tubercle RNAseq

Organism:
Mus musculus
Source name:
Total RNA from E15.5 mouse genital tubercle
Platform:
GPL17021
Series:
GSE62268 GSE62269
Download data: BW
Sample
Accession:
GSM1524281
ID:
301524281
6.

E12.5 Digits RNAseq

Organism:
Mus musculus
Source name:
Total RNA from E12.5 mouse digits
Platform:
GPL17021
Series:
GSE62268 GSE62269
Download data: BW
Sample
Accession:
GSM1524280
ID:
301524280
7.

Digits 4C Hoxa13

Organism:
Mus musculus
Source name:
4C E12.5 mouse digits
Platform:
GPL17021
Series:
GSE62265 GSE62269
Download data: BEDGRAPH, BW
Sample
Accession:
GSM1524258
ID:
301524258
8.

Digits 4C Hoxd13

Organism:
Mus musculus
Source name:
4C E12.5 mouse digits
Platform:
GPL17021
Series:
GSE62265 GSE62269
Download data: BEDGRAPH, BW
Sample
Accession:
GSM1524256
ID:
301524256
9.

Input

Organism:
Mus musculus
Source name:
Input DNA from E12.5 mouse limbs
Platform:
GPL14183
Series:
GSE62073 GSE62269
Download data: CEL
Sample
Accession:
GSM1519352
ID:
301519352
10.

GT E13-5 H3K27Ac

Organism:
Mus musculus
Source name:
H3K27Ac ChIP DNA from E13.5 mouse genital tubercle
Platform:
GPL14183
Series:
GSE62073 GSE62269
Download data: BAR, CEL
Sample
Accession:
GSM1519351
ID:
301519351
11.

GT E15-5 H3K27Me3

Organism:
Mus musculus
Source name:
H3K27Me3 ChIP DNA from E15.5 mouse genital tubercle
Platform:
GPL14183
Series:
GSE62073 GSE62269
Download data: BAR, CEL
Sample
Accession:
GSM1519350
ID:
301519350
12.

GT E15-5 H3K27Ac

Organism:
Mus musculus
Source name:
H3K27Ac ChIP DNA from E15.5 mouse genital tubercle
Platform:
GPL14183
Series:
GSE62073 GSE62269
Download data: BAR, CEL
Sample
Accession:
GSM1519349
ID:
301519349
13.

Genital tubercle 4C Hoxa13

Organism:
Mus musculus
Source name:
4C E15.5 mouse genital tubercle (GT)
Platform:
GPL13112
Series:
GSE62265 GSE62269
Download data: BEDGRAPH, BW
Sample
Accession:
GSM1524259
ID:
301524259
14.

Genital tubercle 4C Hoxd13

Organism:
Mus musculus
Source name:
4C E15.5 mouse genital tubercle (GT)
Platform:
GPL13112
Series:
GSE62265 GSE62269
Download data: BEDGRAPH, BW
Sample
Accession:
GSM1524257
ID:
301524257
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Supplemental Content

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