GSE10613[Accession] - GEO DataSets - NCBI

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Select item 2000106131.

Convergence of Mutation and Epigenetic Alterations Identifies Common Target Genes in Breast and Colon Cancer

(Submitter supplied) The identification and characterization of tumor suppressor genes has enhanced our understanding of the biology of cancer and enabled the development of new diagnostic and therapeutic modalities. Whereas in past decades, a handful of tumor suppressors have been slowly identified using techniques such as linkage analysis, large-scale sequencing of the cancer genome has enabled the rapid identification of a large number of genes that are mutated in cancer. more...

Organism:: Homo sapiens

Type:: Expression profiling by array

Platforms:: GPL4133 GPL1708
20 Samples

Download data: TXT

Series

Accession:: GSE10613

ID:: 200010613

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000041332.

Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)

(Submitter supplied) This multi-pack (4X44K) formatted microarray represents a compiled view of the human genome as it is understood today. The sequence information used to design this product was derived from a broad survey of well known sources such as RefSeq, Goldenpath, Ensembl, Unigene and others. The resulting view of the human genome covers 41K unique genes and transcripts which have been verified and optimized by alignment to the human genome assembly and by Agilent's Empirical Validation process. more...

Organism:: Homo sapiens

10 DataSets
838 Series
3 Related Platforms
15421 Samples

Download data: TXT

Platform

Accession:: GPL4133

ID:: 100004133

Select item 1000017083.

Agilent-012391 Whole Human Genome Oligo Microarray G4112A (Feature Number version)

(Submitter supplied) This single 44K formatted microarray represents a compiled view of the human genome as it is understood today. The sequence information used to design this product was derived from a broad survey of well known sources such as RefSeq, Goldenpath, Ensembl, Unigene and others. The resulting view of the human genome covers 41K unique genes and transcripts which have been verified and optimized by alignment to the human genome assembly and by Agilent's Empirical Validation process. more...

Organism:: Homo sapiens

6 DataSets
136 Series
1 Related Platform
3292 Samples

Download data: TXT

Platform

Accession:: GPL1708

ID:: 100001708

Select item 3002695014.

colorectal cancer DNA hypermethylome: TSA vs mock in SW480

Organism:: Homo sapiens

Source name:: Mock treated SW480 cells (channel 1) TSA treated SW480 cells (channel 2)

Platform:: GPL1708
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM269501

ID:: 300269501

Select item 3002695005.

colorectal cancer DNA hypermethylome: DAC vs mock in SW480

Organism:: Homo sapiens

Source name:: Mock treated SW480 cells (channel 1) 5-AZA treated SW480 cells (channel 2)

Platform:: GPL1708
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM269500

ID:: 300269500

Select item 3002678376.

colorectal cancer DNA hypermethylome: TSA vs mock in COLO320

Organism:: Homo sapiens

Source name:: Mock treated COLO 320 cells (channel 1) TSA treated COLO 320 cells (channel 2)

Platform:: GPL1708
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267837

ID:: 300267837

Select item 3002678367.

colorectal cancer DNA hypermethylome: DAC vs mock in COLO320

Organism:: Homo sapiens

Source name:: Mock treated COLO 320 cells (channel 1) 5-AZA treated COLO 320 cells (channel 2)

Platform:: GPL1708
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267836

ID:: 300267836

Select item 3002678358.

colorectal cancer DNA hypermethylome: TSA vs mock in Caco-2

Organism:: Homo sapiens

Source name:: Mock treated Caco-2 cells (channel 1) TSA treated Caco-2 cells (channel 2)

Platform:: GPL1708
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267835

ID:: 300267835

Select item 3002678349.

colorectal cancer DNA hypermethylome: DAC vs mock in Caco-2

Organism:: Homo sapiens

Source name:: Mock treated Caco-2 cells (channel 1) 5-AZA treated Caco-2 cells (channel 2)

Platform:: GPL1708
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267834

ID:: 300267834

Select item 30026783310.

colorectal cancer DNA hypermethylome: TSA vs mock in HT-29

Organism:: Homo sapiens

Source name:: Mock treated HT-29 cells (channel 1) TSA treated HT-29 cells (channel 2)

Platform:: GPL1708
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267833

ID:: 300267833

Select item 30026783211.

colorectal cancer DNA hypermethylome: DAC vs mock in HT-29

Organism:: Homo sapiens

Source name:: Mock treated HT-29 cells (channel 1) 5-AZA treated HT-29 cells (channel 2)

Platform:: GPL1708
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267832

ID:: 300267832

Select item 30026783112.

colorectal cancer DNA hypermethylome: TSA vs mock in RKO

Organism:: Homo sapiens

Source name:: Mock treated RKO cells (channel 1) TSA treated RKO cells (channel 2)

Platform:: GPL1708
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267831

ID:: 300267831

Select item 30026783013.

colorectal cancer DNA hypermethylome: DAC vs mock in RKO

Organism:: Homo sapiens

Source name:: Mock treated RKO cells (channel 1) 5-AZA treated RKO cells (channel 2)

Platform:: GPL1708
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267830

ID:: 300267830

Select item 30026746414.

breast cancer DNA hypermethylome: TSA vs mock in MDA-MB-468

Organism:: Homo sapiens

Source name:: Mock treated MDA-MB-468 cells (channel 1) TSA treated MDA-MB-468 cells (channel 2)

Platform:: GPL4133
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267464

ID:: 300267464

Select item 30026746315.

breast cancer DNA hypermethylome: DAC vs mock in MDA-MB-468

Organism:: Homo sapiens

Source name:: Mock treated MDA-MB-468 cells (channel 1) 5-AZA treated MDA-MB-468 cells (channel 2)

Platform:: GPL4133
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267463

ID:: 300267463

Select item 30026746216.

breast cancer DNA hypermethylome: TSA vs mock in MDA-MB-231

Organism:: Homo sapiens

Source name:: Mock treated MDA-MB-231 cells (channel 1) TSA treated MDA-MB-231 cells (channel 2)

Platform:: GPL4133
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267462

ID:: 300267462

Select item 30026746117.

breast cancer DNA hypermethylome: DAC vs mock in MDA-MB-231

Organism:: Homo sapiens

Source name:: Mock treated MDA-MB-231 cells (channel 1) 5-AZA treated MDA-MB-231 cells (channel 2)

Platform:: GPL4133
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267461

ID:: 300267461

Select item 30026746018.

breast cancer DNA hypermethylome: TSA vs mock in T-47D

Organism:: Homo sapiens

Source name:: Mock treated T-47D cells (channel 1) TSA treated T-47D cells (channel 2)

Platform:: GPL4133
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267460

ID:: 300267460

Select item 30026745919.

breast cancer DNA hypermethylome: DAC vs mock in T-47D

Organism:: Homo sapiens

Source name:: Mock treated T-47D cells (channel 1) 5-AZA treated T-47D cells (channel 2)

Platform:: GPL4133
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267459

ID:: 300267459

Select item 30026729020.

breast cancer DNA hypermethylome: TSA vs mock in MCF7

Organism:: Homo sapiens

Source name:: Mock treated MCF7 cells (channel 1) TSA treated MCF7 cells (channel 2)

Platform:: GPL4133
Series:: GSE10613

Download data: TXT

Sample

Accession:: GSM267290

ID:: 300267290

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