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Items: 2

1.

Flg22 treatment of Brassicaceae and Arabidopsis thaliana accessions

(Submitter supplied) We used RNA-seq to profile gene expression changes during flg22 activated pattern-triggered immunity in multiple Brassicaceae including Capsella rubella, Cardamine hirsuta and Eutrema salsugineum as well as in multiple Arabidopsis thaliana accessions. This allows comparative transcriptomics within and across species to investigate the evolution of stress-responsive transcrption changes in these species.
Organism:
Cardamine hirsuta; Eutrema salsugineum; Arabidopsis thaliana; Capsella rubella
Type:
Expression profiling by high throughput sequencing
5 related Platforms
102 Samples
Download data: TXT
Series
Accession:
GSE115991
ID:
200115991
2.

On the Origin and Evolutionary Consequences of Gene Body DNA Methylation

(Submitter supplied) In plants, CG DNA methylation is prevalent in the transcribed regions of constitutively expressed genes (“gene body methylation; gbM”), but the origin and function of gbM remain unknown. Here we report the discovery that Eutrema salsugineum, has lost gbM from its genome, the first known instance for a flowering plant. Of all known DNA methyltransferases, only CHROMOMETHYLTRANSFERASE 3 (CMT3) is missing from E. more...
Organism:
Arabidopsis thaliana; Capsella rubella; Brassica rapa; Arabidopsis lyrata; Brassica oleracea; Eutrema salsugineum
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis
10 related Platforms
44 Samples
Download data: BED, TSV
Series
Accession:
GSE75071
ID:
200075071

Supplemental Content

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