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Series GSE115991 Query DataSets for GSE115991
Status Public on Mar 11, 2021
Title Flg22 treatment of Brassicaceae and Arabidopsis thaliana accessions
Organisms Arabidopsis thaliana; Cardamine hirsuta; Eutrema salsugineum; Capsella rubella
Experiment type Expression profiling by high throughput sequencing
Summary We used RNA-seq to profile gene expression changes during flg22 activated pattern-triggered immunity in multiple Brassicaceae including Capsella rubella, Cardamine hirsuta and Eutrema salsugineum as well as in multiple Arabidopsis thaliana accessions. This allows comparative transcriptomics within and across species to investigate the evolution of stress-responsive transcrption changes in these species.
 
Overall design Gene expression profiling via mRNA sequencing of 12-day-old seedlings treated with mock or 1µM flg22 for 1 h, 9 h or 24 h. We used the A. thaliana accessions Can-0, Col-0, Gy-0, Kn-0, Kon and No-0 and the Brassicaceae species Capsella rubella, Cardamine hirsuta and Eutrema salsugineum
 
Contributor(s) Tsuda K, Winkelmüller T
Citation(s) 33751107
Submission date Jun 19, 2018
Last update date Jun 10, 2021
Contact name Kenichi Tsuda
E-mail(s) tsuda@mail.hzau.edu.cn, tsuda@mpipz.mpg.de
Organization name Huazhong Agricultural University
Lab Kenichi Tsuda
Street address No.1 Shizishan Road
City Wuhan
ZIP/Postal code 430070
Country China
 
Platforms (5)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
GPL21147 Illumina HiSeq 2500 (Eutrema salsugineum)
GPL21179 Illumina HiSeq 3000 (Arabidopsis thaliana)
Samples (102)
GSM3204463 At_M_R1_1h
GSM3204464 At_T_R1_1h
GSM3204465 At_M_R1_9h
Relations
BioProject PRJNA476754
SRA SRP150839

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115991_merged_counts_Ath.txt.gz 775.4 Kb (ftp)(http) TXT
GSE115991_merged_counts_Can0.txt.gz 299.0 Kb (ftp)(http) TXT
GSE115991_merged_counts_Chi.txt.gz 800.9 Kb (ftp)(http) TXT
GSE115991_merged_counts_Cru.txt.gz 741.7 Kb (ftp)(http) TXT
GSE115991_merged_counts_Esa.txt.gz 746.4 Kb (ftp)(http) TXT
GSE115991_merged_counts_Gy0.txt.gz 305.7 Kb (ftp)(http) TXT
GSE115991_merged_counts_Kn0.txt.gz 302.8 Kb (ftp)(http) TXT
GSE115991_merged_counts_Kon.txt.gz 300.2 Kb (ftp)(http) TXT
GSE115991_merged_counts_No0.txt.gz 294.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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