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| Status |
Public on Mar 11, 2021 |
| Title |
Flg22 treatment of Brassicaceae and Arabidopsis thaliana accessions |
| Organisms |
Arabidopsis thaliana; Cardamine hirsuta; Eutrema salsugineum; Capsella rubella |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We used RNA-seq to profile gene expression changes during flg22 activated pattern-triggered immunity in multiple Brassicaceae including Capsella rubella, Cardamine hirsuta and Eutrema salsugineum as well as in multiple Arabidopsis thaliana accessions. This allows comparative transcriptomics within and across species to investigate the evolution of stress-responsive transcrption changes in these species.
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| |
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| Overall design |
Gene expression profiling via mRNA sequencing of 12-day-old seedlings treated with mock or 1µM flg22 for 1 h, 9 h or 24 h. We used the A. thaliana accessions Can-0, Col-0, Gy-0, Kn-0, Kon and No-0 and the Brassicaceae species Capsella rubella, Cardamine hirsuta and Eutrema salsugineum
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| |
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| Contributor(s) |
Tsuda K, Winkelmüller T |
| Citation(s) |
33751107 |
| |
| Submission date |
Jun 19, 2018 |
| Last update date |
Jun 10, 2021 |
| Contact name |
Kenichi Tsuda |
| E-mail(s) |
tsuda@mail.hzau.edu.cn, tsuda@mpipz.mpg.de
|
| Organization name |
Huazhong Agricultural University
|
| Lab |
Kenichi Tsuda
|
| Street address |
No.1 Shizishan Road
|
| City |
Wuhan |
| ZIP/Postal code |
430070 |
| Country |
China |
| |
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| Platforms (5)
|
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
| GPL21147 |
Illumina HiSeq 2500 (Eutrema salsugineum) |
| GPL21179 |
Illumina HiSeq 3000 (Arabidopsis thaliana) |
| GPL25198 |
Illumina HiSeq 2500 (Cardamine hirsuta) |
| GPL25199 |
Illumina HiSeq 2500 (Capsella rubella) |
|
| Samples (102)
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|
| Relations |
| BioProject |
PRJNA476754 |
| SRA |
SRP150839 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE115991_merged_counts_Ath.txt.gz |
775.4 Kb |
(ftp)(http) |
TXT |
| GSE115991_merged_counts_Can0.txt.gz |
299.0 Kb |
(ftp)(http) |
TXT |
| GSE115991_merged_counts_Chi.txt.gz |
800.9 Kb |
(ftp)(http) |
TXT |
| GSE115991_merged_counts_Cru.txt.gz |
741.7 Kb |
(ftp)(http) |
TXT |
| GSE115991_merged_counts_Esa.txt.gz |
746.4 Kb |
(ftp)(http) |
TXT |
| GSE115991_merged_counts_Gy0.txt.gz |
305.7 Kb |
(ftp)(http) |
TXT |
| GSE115991_merged_counts_Kn0.txt.gz |
302.8 Kb |
(ftp)(http) |
TXT |
| GSE115991_merged_counts_Kon.txt.gz |
300.2 Kb |
(ftp)(http) |
TXT |
| GSE115991_merged_counts_No0.txt.gz |
294.8 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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