GPL20002[RGSE] - GEO DataSets

Select item 2002000341.

Next Generation Sequencing of tomato germplasm for cold tolerance and yield studies

(Submitter supplied) Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goal of this study is genome wide association mapping for cold tolerance and yield studies in tomato (Solanum spp.) by phenotyping the genotypes under six diffrent temporal arrangments. Also for conducting quantitative reverse transcription polymerase chain reaction (qRT–PCR) assay of cold tolerant genes.

Organism:: Solanum chilense; Solanum lycopersicum var. cerasiforme; Solanum lycopersicum; Solanum habrochaites; Solanum peruvianum; Solanum pimpinellifolium

Type:: Genome variation profiling by high throughput sequencing

6 related Platforms
50 Samples

Download data: VCF

Series

Accession:: GSE200034

ID:: 200200034

Select item 2001298092.

Expression analysis of tomato S. pimpinellifolium accession LA1589 wild type and the Nearly Isogenic Lines lc, fas and lc/fas NILs during floral development.

(Submitter supplied) The goal of this study is to decipher the effect of the tomato lc and fas mutation on gene expression during floral development in tomato. The 3'Tag RNA libraries were sequenced on a Illumina HiSeq2500 at Genomic Resources Core Facility at Weill Cornell Medical College for 100 bp single–end sequencing. Total raw reads for each sample ranged between 5 to 10 million per sample.

Organism:: Solanum pimpinellifolium

Type:: Expression profiling by high throughput sequencing

Platform:: GPL20002
60 Samples

Download data: CSV

Series

Accession:: GSE129809

ID:: 200129809

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000748283.

Transcriptome datasets of big-fruit tomato MM, cherry tomato CC and wild tomato PP

(Submitter supplied) Six stages of flower and fruit materials from S. lycopersicum var. Moneymaker (MM), S. lycopersicum var. cerasiforme LA1310 (CC) and Solanum pimpinellifolium PI365967 (PP) including 5DPA, 20DPA, mature green, break stage and red ripen fruits and -2DPA flower

Organism:: Solanum pimpinellifolium; Solanum lycopersicum var. cerasiforme; Solanum lycopersicum

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL19694 GPL21115 GPL20002
3 Samples

Download data: BW

Series

Accession:: GSE74828

ID:: 200074828

SRA Run Selector

Select item 2000718194.

Identification of miRNAs and their targets in tomato at moderately and acutely elevated temperatures by high-throughput sequencing and degradome analysis

(Submitter supplied) MicroRNAs (miRNAs) are 19-24 nucleotide (nt) noncoding RNAs that play important roles in abiotic stress responses in plants. High temperatures have been the subject of considerable attention due to their negative effects on plant growth and development. Heat-responsive miRNAs have been identified in some plants. However, there have been no reports on the global identification of miRNAs and their targets in tomato at high temperatures, especially at different elevated temperatures. more...

Organism:: Solanum pimpinellifolium

Type:: Expression profiling by high throughput sequencing; Other

Platform:: GPL20002
6 Samples

Download data: XLS

Series

Accession:: GSE71819

ID:: 200071819

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000676545.

Dissection of the style’s response to pollination using transcriptome profiling in self-compatible (Solanum pimpinellifolium) and self-incompatible (Solanum chilense) tomato species

(Submitter supplied) Background: Tomato (Solanum lycopersicum) self-compatibility (SC) is defined as self-pollen tubes that can penetrate their own stigma, elongate in the style and fertilize their own ovules. Self-incompatibility (SI) is defined as self-pollen tubes that are prevented from developing in the style. To determine the influence of gene expression on style self-pollination, a transcriptome-wide comparative analysis of SC and SI tomato unpollinated/pollinated styles was performed using RNA-sequencing (RNA-seq) data. more...

Organism:: Solanum chilense; Solanum pimpinellifolium

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL20002 GPL20003
12 Samples

Download data: XLSX

Series

Accession:: GSE67654

ID:: 200067654

PubMed Full text in PMC Similar studies SRA Run Selector

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