|
| Status |
Public on Apr 01, 2023 |
| Title |
Next Generation Sequencing of tomato germplasm for cold tolerance and yield studies |
| Organisms |
Solanum lycopersicum; Solanum peruvianum; Solanum chilense; Solanum pimpinellifolium; Solanum habrochaites; Solanum lycopersicum var. cerasiforme |
| Experiment type |
Genome variation profiling by high throughput sequencing
|
| Summary |
Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goal of this study is genome wide association mapping for cold tolerance and yield studies in tomato (Solanum spp.) by phenotyping the genotypes under six diffrent temporal arrangments. Also for conducting quantitative reverse transcription polymerase chain reaction (qRT–PCR) assay of cold tolerant genes.
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| |
|
| Overall design |
50 samples
|
| |
|
| Contributor(s) |
Riyaz Shah L, Ahmed N, Hussain K, Bhat B, Masoodi KZ |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Apr 03, 2022 |
| Last update date |
Apr 01, 2023 |
| Contact name |
Basharat Ahmad Bhat |
| E-mail(s) |
bb284@snu.edu.in
|
| Phone |
9469662374
|
| Organization name |
Sher-e-Kashmir University of Agricultural Sciences and Technology
|
| Department |
Animal Biotechnology
|
| Street address |
Shuhama
|
| City |
Gandarbal |
| State/province |
Kashmir |
| ZIP/Postal code |
190006 |
| Country |
India |
| |
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| Platforms (6)
|
| GPL19694 |
Illumina HiSeq 2500 (Solanum lycopersicum) |
| GPL20002 |
Illumina HiSeq 2500 (Solanum pimpinellifolium) |
| GPL20003 |
Illumina HiSeq 2500 (Solanum chilense) |
| GPL21115 |
Illumina HiSeq 2500 (Solanum lycopersicum var. cerasiforme) |
| GPL23877 |
Illumina HiSeq 2500 (Solanum habrochaites) |
| GPL32114 |
Illumina HiSeq 2500 (Solanum peruvianum) |
|
| Samples (50)
|
|
| Relations |
| BioProject |
PRJNA822769 |
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